Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6J9S entry

There are 5 chains in PDB entry 6J9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	VAL 312
B	SER 3	PHE 317
C	SER 3	THR 314
D	SER 3	THR 314
E	SER 3	ASN 99

There are101 helices in PDB entry 6J9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed 310
Helix 2	AA2	A	18	31	Right-handed alpha
Helix 3	AA3	A	43	56	Right-handed alpha
Helix 4	AA4	A	57	61	Right-handed 310
Helix 5	AA5	A	70	75	Right-handed 310
Helix 6	AA6	A	102	115	Right-handed alpha
Helix 7	AA7	A	127	140	Right-handed alpha
Helix 8	AA8	A	142	144	Right-handed 310
Helix 9	AA9	A	151	167	Right-handed alpha
Helix 10	AB1	A	169	171	Right-handed 310
Helix 11	AB2	A	189	191	Right-handed 310
Helix 12	AB3	A	199	206	Right-handed alpha
Helix 13	AB4	A	210	223	Right-handed alpha
Helix 14	AB5	A	223	233	Right-handed alpha
Helix 15	AB6	A	236	252	Right-handed alpha
Helix 16	AB7	A	267	269	Right-handed 310
Helix 17	AB8	A	295	312	Right-handed alpha
Helix 18	AB9	B	18	32	Right-handed alpha
Helix 19	AC1	B	43	56	Right-handed alpha
Helix 20	AC2	B	57	61	Right-handed 310
Helix 21	AC3	B	70	75	Right-handed 310
Helix 22	AC4	B	93	115	Right-handed alpha
Helix 23	AC5	B	127	140	Right-handed alpha
Helix 24	AC6	B	142	144	Right-handed 310
Helix 25	AC7	B	151	167	Right-handed alpha
Helix 26	AC8	B	169	171	Right-handed 310
Helix 27	AC9	B	189	191	Right-handed 310
Helix 28	AD1	B	199	206	Right-handed alpha
Helix 29	AD2	B	210	223	Right-handed alpha
Helix 30	AD3	B	223	233	Right-handed alpha
Helix 31	AD4	B	236	252	Right-handed alpha
Helix 32	AD5	B	267	269	Right-handed 310
Helix 33	AD6	B	295	317	Right-handed alpha
Helix 34	AD7	C	3	8	Right-handed 310
Helix 35	AD8	C	18	32	Right-handed alpha
Helix 36	AD9	C	43	56	Right-handed alpha
Helix 37	AE1	C	57	61	Right-handed 310
Helix 38	AE2	C	70	77	Right-handed 310
Helix 39	AE3	C	99	115	Right-handed alpha
Helix 40	AE4	C	127	140	Right-handed alpha
Helix 41	AE5	C	142	144	Right-handed 310
Helix 42	AE6	C	151	167	Right-handed alpha
Helix 43	AE7	C	169	171	Right-handed 310
Helix 44	AE8	C	189	191	Right-handed 310
Helix 45	AE9	C	199	206	Right-handed alpha
Helix 46	AF1	C	210	223	Right-handed alpha
Helix 47	AF2	C	223	233	Right-handed alpha
Helix 48	AF3	C	236	252	Right-handed alpha
Helix 49	AF4	C	267	269	Right-handed 310
Helix 50	AF5	C	295	314	Right-handed alpha
Helix 51	AF6	D	3	8	Right-handed 310
Helix 52	AF7	D	18	31	Right-handed alpha
Helix 53	AF8	D	43	56	Right-handed alpha
Helix 54	AF9	D	57	61	Right-handed 310
Helix 55	AG1	D	70	77	Right-handed 310
Helix 56	AG2	D	101	115	Right-handed alpha
Helix 57	AG3	D	127	140	Right-handed alpha
Helix 58	AG4	D	142	144	Right-handed 310
Helix 59	AG5	D	151	167	Right-handed alpha
Helix 60	AG6	D	169	171	Right-handed 310
Helix 61	AG7	D	189	191	Right-handed 310
Helix 62	AG8	D	199	206	Right-handed alpha
Helix 63	AG9	D	210	223	Right-handed alpha
Helix 64	AH1	D	223	233	Right-handed alpha
Helix 65	AH2	D	236	252	Right-handed alpha
Helix 66	AH3	D	267	269	Right-handed 310
Helix 67	AH4	D	295	314	Right-handed alpha
Helix 68	AH5	E	3	8	Right-handed 310
Helix 69	AH6	E	18	32	Right-handed alpha
Helix 70	AH7	E	43	56	Right-handed alpha
Helix 71	AH8	E	57	61	Right-handed 310
Helix 72	AH9	E	70	77	Right-handed 310
Helix 73	AI1	E	93	115	Right-handed alpha
Helix 74	AI2	E	127	140	Right-handed alpha
Helix 75	AI3	E	142	144	Right-handed 310
Helix 76	AI4	E	151	167	Right-handed alpha
Helix 77	AI5	E	169	171	Right-handed 310
Helix 78	AI6	E	189	191	Right-handed 310
Helix 79	AI7	E	199	206	Right-handed alpha
Helix 80	AI8	E	210	223	Right-handed alpha
Helix 81	AI9	E	223	233	Right-handed alpha
Helix 82	AJ1	E	236	252	Right-handed alpha
Helix 83	AJ2	E	267	269	Right-handed 310
Helix 84	AJ3	E	295	317	Right-handed alpha
Helix 85	AJ4	F	3	8	Right-handed 310
Helix 86	AJ5	F	18	32	Right-handed alpha
Helix 87	AJ6	F	43	56	Right-handed alpha
Helix 88	AJ7	F	57	61	Right-handed 310
Helix 89	AJ8	F	70	75	Right-handed 310
Helix 90	AJ9	F	93	115	Right-handed alpha
Helix 91	AK1	F	127	140	Right-handed alpha
Helix 92	AK2	F	142	144	Right-handed 310
Helix 93	AK3	F	151	167	Right-handed alpha
Helix 94	AK4	F	169	171	Right-handed 310
Helix 95	AK5	F	189	191	Right-handed 310
Helix 96	AK6	F	199	206	Right-handed alpha
Helix 97	AK7	F	210	223	Right-handed alpha
Helix 98	AK8	F	223	233	Right-handed alpha
Helix 99	AK9	F	236	252	Right-handed alpha
Helix 100	AL1	F	267	269	Right-handed 310
Helix 101	AL2	F	295	317	Right-handed alpha

There are 24 sheets in PDB entry 6J9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	36	40	parallel
Strand 3	A	11	15	parallel
Strand 4	A	79	82	parallel
Strand 5	A	120	123	parallel
Strand 6	A	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	193	194	anti-parallel
Strand 3	A	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	265	first strand
Strand 2	A	271	282	anti-parallel
Strand 3	A	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	36	40	parallel
Strand 3	B	11	15	parallel
Strand 4	B	79	82	parallel
Strand 5	B	120	123	parallel
Strand 6	B	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	193	194	anti-parallel
Strand 3	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	265	first strand
Strand 2	B	271	282	anti-parallel
Strand 3	B	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	36	40	parallel
Strand 3	C	11	15	parallel
Strand 4	C	79	82	parallel
Strand 5	C	120	123	parallel
Strand 6	C	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	193	194	anti-parallel
Strand 3	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	265	first strand
Strand 2	C	271	282	anti-parallel
Strand 3	C	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	36	40	parallel
Strand 3	D	11	15	parallel
Strand 4	D	79	82	parallel
Strand 5	D	120	123	parallel
Strand 6	D	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	193	194	anti-parallel
Strand 3	D	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	265	first strand
Strand 2	D	271	282	anti-parallel
Strand 3	D	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	36	40	parallel
Strand 3	E	11	15	parallel
Strand 4	E	79	82	parallel
Strand 5	E	120	123	parallel
Strand 6	E	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	174	first strand
Strand 2	E	193	194	anti-parallel
Strand 3	E	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	265	first strand
Strand 2	E	271	282	anti-parallel
Strand 3	E	285	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	36	40	parallel
Strand 3	F	11	15	parallel
Strand 4	F	79	82	parallel
Strand 5	F	120	123	parallel
Strand 6	F	146	148	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	174	first strand
Strand 2	F	193	194	anti-parallel
Strand 3	F	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	178	first strand
Strand 2	F	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	265	first strand
Strand 2	F	271	282	anti-parallel
Strand 3	F	285	289	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6J9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6J9S