Analysis of interatomic Contacts of Structural Units in PDB entry:
6JAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JAK entry

There are 4 chains in PDB entry 6JAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 456
B
 SER 2PRO 456
C
 SER 2PRO 456
D
 SER 2PRO 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 6JAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 36Right-handed alpha
Helix 2
AA2
A
69 77Right-handed alpha
Helix 3
AA3
A
79 84Right-handed alpha
Helix 4
AA4
A
84 90Right-handed alpha
Helix 5
AA5
A
91 96Right-handed 310
Helix 6
AA6
A
99 118Right-handed alpha
Helix 7
AA7
A
119 121Right-handed 310
Helix 8
AA8
A
131 135Right-handed 310
Helix 9
AA9
A
136 144Right-handed alpha
Helix 10
AB1
A
160 165Right-handed alpha
Helix 11
AB2
A
169 178Right-handed alpha
Helix 12
AB3
A
187 202Right-handed alpha
Helix 13
AB4
A
229 239Right-handed alpha
Helix 14
AB5
A
242 250Right-handed alpha
Helix 15
AB6
A
265 268Right-handed 310
Helix 16
AB7
A
269 284Right-handed alpha
Helix 17
AB8
A
285 288Right-handed 310
Helix 18
AB9
A
304 326Right-handed alpha
Helix 19
AC1
A
341 352Right-handed alpha
Helix 20
AC2
A
365 375Right-handed alpha
Helix 21
AC3
A
389 394Right-handed 310
Helix 22
AC4
A
405 418Right-handed alpha
Helix 23
AC5
A
420 438Right-handed alpha
Helix 24
AC6
A
439 453Right-handed alpha
Helix 25
AC7
B
23 36Right-handed alpha
Helix 26
AC8
B
69 77Right-handed alpha
Helix 27
AC9
B
79 84Right-handed alpha
Helix 28
AD1
B
84 90Right-handed alpha
Helix 29
AD2
B
92 96Right-handed 310
Helix 30
AD3
B
99 118Right-handed alpha
Helix 31
AD4
B
119 121Right-handed 310
Helix 32
AD5
B
131 135Right-handed 310
Helix 33
AD6
B
136 144Right-handed alpha
Helix 34
AD7
B
160 165Right-handed alpha
Helix 35
AD8
B
169 178Right-handed alpha
Helix 36
AD9
B
187 202Right-handed alpha
Helix 37
AE1
B
229 239Right-handed alpha
Helix 38
AE2
B
242 247Right-handed alpha
Helix 39
AE3
B
265 268Right-handed 310
Helix 40
AE4
B
269 284Right-handed alpha
Helix 41
AE5
B
285 288Right-handed 310
Helix 42
AE6
B
307 326Right-handed alpha
Helix 43
AE7
B
341 352Right-handed alpha
Helix 44
AE8
B
365 375Right-handed alpha
Helix 45
AE9
B
389 394Right-handed 310
Helix 46
AF1
B
405 418Right-handed alpha
Helix 47
AF2
B
420 438Right-handed alpha
Helix 48
AF3
B
439 453Right-handed alpha
Helix 49
AF4
C
23 36Right-handed alpha
Helix 50
AF5
C
69 77Right-handed alpha
Helix 51
AF6
C
79 84Right-handed alpha
Helix 52
AF7
C
84 90Right-handed alpha
Helix 53
AF8
C
92 96Right-handed 310
Helix 54
AF9
C
99 118Right-handed alpha
Helix 55
AG1
C
119 121Right-handed 310
Helix 56
AG2
C
131 135Right-handed 310
Helix 57
AG3
C
136 144Right-handed alpha
Helix 58
AG4
C
160 165Right-handed alpha
Helix 59
AG5
C
169 178Right-handed alpha
Helix 60
AG6
C
187 202Right-handed alpha
Helix 61
AG7
C
229 239Right-handed alpha
Helix 62
AG8
C
242 252Right-handed alpha
Helix 63
AG9
C
265 268Right-handed 310
Helix 64
AH1
C
269 284Right-handed alpha
Helix 65
AH2
C
285 288Right-handed 310
Helix 66
AH3
C
305 326Right-handed alpha
Helix 67
AH4
C
341 352Right-handed alpha
Helix 68
AH5
C
365 374Right-handed alpha
Helix 69
AH6
C
389 394Right-handed 310
Helix 70
AH7
C
405 418Right-handed alpha
Helix 71
AH8
C
420 438Right-handed alpha
Helix 72
AH9
C
439 452Right-handed alpha
Helix 73
AI1
D
23 36Right-handed alpha
Helix 74
AI2
D
69 77Right-handed alpha
Helix 75
AI3
D
79 84Right-handed alpha
Helix 76
AI4
D
84 90Right-handed alpha
Helix 77
AI5
D
92 96Right-handed 310
Helix 78
AI6
D
99 118Right-handed alpha
Helix 79
AI7
D
119 121Right-handed 310
Helix 80
AI8
D
131 135Right-handed 310
Helix 81
AI9
D
136 144Right-handed alpha
Helix 82
AJ1
D
160 165Right-handed alpha
Helix 83
AJ2
D
169 178Right-handed alpha
Helix 84
AJ3
D
187 202Right-handed alpha
Helix 85
AJ4
D
229 239Right-handed alpha
Helix 86
AJ5
D
269 284Right-handed alpha
Helix 87
AJ6
D
285 288Right-handed 310
Helix 88
AJ7
D
305 326Right-handed alpha
Helix 89
AJ8
D
341 352Right-handed alpha
Helix 90
AJ9
D
365 374Right-handed alpha
Helix 91
AK1
D
389 394Right-handed 310
Helix 92
AK2
D
405 418Right-handed alpha
Helix 93
AK3
D
420 438Right-handed alpha
Helix 94
AK4
D
439 452Right-handed alpha
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There are 8 sheets in PDB entry 6JAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
37 46parallel
Strand 4
A
4 10parallel
Strand 5
A
126 129parallel
Strand 6
A
149 153parallel
Strand 7
A
182 185parallel
Strand 8
A
217 223parallel
Strand 9
A
211 214anti-parallel
Strand 10
A
205 207anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
291 296parallel
Strand 3
A
256 261parallel
Strand 4
A
354 357parallel
Strand 5
A
382 386parallel
Strand 6
A
399 401parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
37 46parallel
Strand 4
B
4 8parallel
Strand 5
B
126 129parallel
Strand 6
B
149 153parallel
Strand 7
B
182 185parallel
Strand 8
B
217 223parallel
Strand 9
B
211 214anti-parallel
Strand 10
B
205 207anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
291 296parallel
Strand 3
B
256 261parallel
Strand 4
B
354 357parallel
Strand 5
B
382 386parallel
Strand 6
B
399 401parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
61 65anti-parallel
Strand 3
C
37 42parallel
Strand 4
C
4 10parallel
Strand 5
C
126 129parallel
Strand 6
C
150 153parallel
Strand 7
C
182 185parallel
Strand 8
C
217 223parallel
Strand 9
C
211 214anti-parallel
Strand 10
C
205 206anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 336first strand
Strand 2
C
291 296parallel
Strand 3
C
256 261parallel
Strand 4
C
354 357parallel
Strand 5
C
382 386parallel
Strand 6
C
399 401parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 58first strand
Strand 2
D
61 68anti-parallel
Strand 3
D
37 46parallel
Strand 4
D
4 10parallel
Strand 5
D
126 129parallel
Strand 6
D
149 154parallel
Strand 7
D
182 185parallel
Strand 8
D
217 223parallel
Strand 9
D
211 214anti-parallel
Strand 10
D
205 206anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 336first strand
Strand 2
D
291 296parallel
Strand 3
D
256 261parallel
Strand 4
D
354 357parallel
Strand 5
D
382 386parallel
Strand 6
D
399 401parallel
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