Analysis of interatomic Contacts of Structural Units in PDB entry:
6JAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JAT entry

There are 4 chains in PDB entry 6JAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20GLU 494
B
 THR 66ASP 81
C
 SER 20GLN 491
D
 LEU 67ASP 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6JAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
44 63Right-handed alpha
Helix 3
AA3
A
73 76Right-handed 310
Helix 4
AA4
A
77 88Right-handed alpha
Helix 5
AA5
A
125 127Right-handed 310
Helix 6
AA6
A
130 135Right-handed alpha
Helix 7
AA7
A
138 144Right-handed alpha
Helix 8
AA8
A
145 151Right-handed alpha
Helix 9
AA9
A
151 165Right-handed alpha
Helix 10
AB1
A
171 176Right-handed alpha
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
189 195Right-handed alpha
Helix 13
AB4
A
200 226Right-handed alpha
Helix 14
AB5
A
227 230Right-handed 310
Helix 15
AB6
A
239 254Right-handed alpha
Helix 16
AB7
A
272 276Right-handed 310
Helix 17
AB8
A
316 325Right-handed alpha
Helix 18
AB9
A
348 359Right-handed alpha
Helix 19
AC1
A
377 388Right-handed alpha
Helix 20
AC2
A
390 399Right-handed alpha
Helix 21
AC3
A
402 409Right-handed alpha
Helix 22
AC4
A
418 438Right-handed alpha
Helix 23
AC5
A
443 454Right-handed alpha
Helix 24
AC6
A
457 493Right-handed alpha
Helix 25
AC7
C
21 37Right-handed alpha
Helix 26
AC8
C
44 62Right-handed alpha
Helix 27
AC9
C
73 76Right-handed 310
Helix 28
AD1
C
77 88Right-handed alpha
Helix 29
AD2
C
125 127Right-handed 310
Helix 30
AD3
C
130 135Right-handed alpha
Helix 31
AD4
C
138 145Right-handed alpha
Helix 32
AD5
C
145 151Right-handed alpha
Helix 33
AD6
C
151 165Right-handed alpha
Helix 34
AD7
C
171 176Right-handed alpha
Helix 35
AD8
C
184 188Right-handed 310
Helix 36
AD9
C
189 195Right-handed alpha
Helix 37
AE1
C
201 226Right-handed alpha
Helix 38
AE2
C
227 230Right-handed 310
Helix 39
AE3
C
232 236Right-handed 310
Helix 40
AE4
C
239 254Right-handed alpha
Helix 41
AE5
C
272 276Right-handed 310
Helix 42
AE6
C
316 325Right-handed alpha
Helix 43
AE7
C
348 359Right-handed alpha
Helix 44
AE8
C
377 388Right-handed alpha
Helix 45
AE9
C
390 397Right-handed alpha
Helix 46
AF1
C
402 409Right-handed alpha
Helix 47
AF2
C
418 438Right-handed alpha
Helix 48
AF3
C
443 454Right-handed alpha
Helix 49
AF4
C
457 488Right-handed alpha
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There are 8 sheets in PDB entry 6JAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
277 278parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
285 288anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
255 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
364 370anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 100first strand
Strand 2
C
104 109anti-parallel
Strand 3
C
307 310anti-parallel
Strand 4
C
277 278parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 123first strand
Strand 2
C
293 297anti-parallel
Strand 3
C
285 288anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
265 269anti-parallel
Strand 3
C
255 258anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
335 341first strand
Strand 2
C
364 370anti-parallel
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