Analysis of interatomic Contacts of Structural Units in PDB entry:
6JAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JAU entry

There are 2 chains in PDB entry 6JAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22ALA 313
B
 PRO 145LEU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6JAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
94 96Right-handed 310
Helix 3
AA3
A
100 105Right-handed 310
Helix 4
AA4
A
114 117Right-handed 310
Helix 5
AA5
A
188 193Right-handed 310
Helix 6
AA6
A
297 307Right-handed alpha
Helix 7
AA7
B
155 161Right-handed alpha
Helix 8
AA8
B
162 176Right-handed alpha
Helix 9
AA9
B
182 190Right-handed alpha
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There are 3 sheets in PDB entry 6JAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 129first strand
Strand 2
A
132 141anti-parallel
Strand 3
A
148 154anti-parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
172 183anti-parallel
Strand 6
A
40 48anti-parallel
Strand 7
A
51 61anti-parallel
Strand 8
A
67 73anti-parallel
Strand 9
A
80 84anti-parallel
Strand 10
A
87 92anti-parallel
Strand 11
A
198 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
308 310anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 232first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
288 294anti-parallel
Strand 5
A
274 281anti-parallel
Strand 6
A
267 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il