Analysis of interatomic Contacts of Structural Units in PDB entry:
6JB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JB4 entry

There is 1 chain in PDB entry 6JB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3HIS 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6JB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
73 78Right-handed alpha
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
89 94Right-handed alpha
Helix 7
AA7
A
97 104Right-handed alpha
Helix 8
AA8
A
126 132Right-handed alpha
Helix 9
AA9
A
140 158Right-handed alpha
Helix 10
AB1
A
173 187Right-handed alpha
Helix 11
AB2
A
203 217Right-handed alpha
Helix 12
AB3
A
222 228Right-handed 310
Helix 13
AB4
A
229 239Right-handed alpha
Helix 14
AB5
A
250 257Right-handed alpha
Helix 15
AB6
A
297 309Right-handed alpha
Helix 16
AB7
A
310 322Right-handed alpha
Helix 17
AB8
A
327 332Right-handed 310
Helix 18
AB9
A
333 340Right-handed alpha
Helix 19
AC1
A
341 346Right-handed alpha
Helix 20
AC2
A
346 352Right-handed alpha
Helix 21
AC3
A
357 362Right-handed alpha
Helix 22
AC4
A
364 381Right-handed alpha
Helix 23
AC5
A
385 402Right-handed alpha
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There are 3 sheets in PDB entry 6JB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
5 9parallel
Strand 3
A
66 70parallel
Strand 4
A
284 291anti-parallel
Strand 5
A
113 119anti-parallel
Strand 6
A
324 325anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
109 110anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
242 247parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
266 269anti-parallel
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