Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JBD entry

There is 1 chain in PDB entry 6JBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6JBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
68 79Right-handed alpha
Helix 3
AA3
A
102 120Right-handed alpha
Helix 4
AA4
A
122 137Right-handed alpha
Helix 5
AA5
A
142 150Right-handed alpha
Helix 6
AA6
A
192 212Right-handed alpha
Helix 7
AA7
A
214 229Right-handed alpha
Helix 8
AA8
A
233 244Right-handed alpha
Helix 9
AA9
A
265 278Right-handed alpha
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There are 3 sheets in PDB entry 6JBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
27 47anti-parallel
Strand 5
A
152 157anti-parallel
Strand 6
A
165 168anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
85 92parallel
Strand 4
A
27 47anti-parallel
Strand 5
A
2 18anti-parallel
Strand 6
A
294 297anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
258 264anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
284 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il