Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JBH entry

There are 4 chains in PDB entry 6JBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 265
B
 GLU 2LEU 265
C
 MET 1TYR 267
D
 MET 1TYR 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 6JBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
64 71Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
118 123Right-handed alpha
Helix 5
AA5
A
123 132Right-handed alpha
Helix 6
AA6
A
133 139Right-handed 310
Helix 7
AA7
A
140 144Right-handed 310
Helix 8
AA8
A
145 157Right-handed alpha
Helix 9
AA9
A
178 193Right-handed alpha
Helix 10
AB1
A
202 210Right-handed alpha
Helix 11
AB2
A
229 244Right-handed alpha
Helix 12
AB3
A
251 261Right-handed alpha
Helix 13
AB4
A
262 264Right-handed 310
Helix 14
AB5
B
58 62Right-handed 310
Helix 15
AB6
B
64 71Right-handed alpha
Helix 16
AB7
B
101 114Right-handed alpha
Helix 17
AB8
B
118 123Right-handed alpha
Helix 18
AB9
B
123 132Right-handed alpha
Helix 19
AC1
B
133 139Right-handed 310
Helix 20
AC2
B
140 144Right-handed 310
Helix 21
AC3
B
145 157Right-handed alpha
Helix 22
AC4
B
178 193Right-handed alpha
Helix 23
AC5
B
202 210Right-handed alpha
Helix 24
AC6
B
229 244Right-handed alpha
Helix 25
AC7
B
251 261Right-handed alpha
Helix 26
AC8
B
262 264Right-handed 310
Helix 27
AC9
C
3 14Right-handed alpha
Helix 28
AD1
C
14 21Right-handed alpha
Helix 29
AD2
C
21 30Right-handed alpha
Helix 30
AD3
C
38 56Right-handed alpha
Helix 31
AD4
C
70 76Right-handed alpha
Helix 32
AD5
C
77 86Right-handed alpha
Helix 33
AD6
C
88 93Right-handed alpha
Helix 34
AD7
C
99 104Right-handed alpha
Helix 35
AD8
C
108 112Right-handed 310
Helix 36
AD9
C
113 120Right-handed alpha
Helix 37
AE1
C
123 128Right-handed alpha
Helix 38
AE2
C
131 136Right-handed alpha
Helix 39
AE3
C
149 167Right-handed alpha
Helix 40
AE4
C
168 175Right-handed alpha
Helix 41
AE5
C
176 188Right-handed alpha
Helix 42
AE6
C
213 223Right-handed alpha
Helix 43
AE7
C
232 234Right-handed 310
Helix 44
AE8
C
235 259Right-handed alpha
Helix 45
AE9
D
3 14Right-handed alpha
Helix 46
AF1
D
14 21Right-handed alpha
Helix 47
AF2
D
21 30Right-handed alpha
Helix 48
AF3
D
38 56Right-handed alpha
Helix 49
AF4
D
70 76Right-handed alpha
Helix 50
AF5
D
77 86Right-handed alpha
Helix 51
AF6
D
88 93Right-handed alpha
Helix 52
AF7
D
99 104Right-handed alpha
Helix 53
AF8
D
108 112Right-handed 310
Helix 54
AF9
D
113 120Right-handed alpha
Helix 55
AG1
D
123 128Right-handed alpha
Helix 56
AG2
D
131 136Right-handed alpha
Helix 57
AG3
D
149 167Right-handed alpha
Helix 58
AG4
D
168 175Right-handed alpha
Helix 59
AG5
D
176 188Right-handed alpha
Helix 60
AG6
D
213 223Right-handed alpha
Helix 61
AG7
D
232 234Right-handed 310
Helix 62
AG8
D
235 259Right-handed alpha
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There are 4 sheets in PDB entry 6JBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
7 12anti-parallel
Strand 3
A
78 80anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
195 199parallel
Strand 3
A
52 55parallel
Strand 4
A
212 217parallel
Strand 5
A
220 225anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
7 12anti-parallel
Strand 3
B
78 80anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
195 199parallel
Strand 3
B
52 55parallel
Strand 4
B
212 217parallel
Strand 5
B
220 225anti-parallel
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