Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JBI entry

There are 2 chains in PDB entry 6JBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15LEU 479
B
 ARG 15LEU 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6JBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 84Right-handed alpha
Helix 2
AA2
A
91 100Right-handed alpha
Helix 3
AA3
A
101 106Right-handed alpha
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
121 141Right-handed alpha
Helix 6
AA6
A
153 157Right-handed 310
Helix 7
AA7
A
158 168Right-handed alpha
Helix 8
AA8
A
186 191Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
213 229Right-handed alpha
Helix 11
AB2
A
254 262Right-handed alpha
Helix 12
AB3
A
264 278Right-handed alpha
Helix 13
AB4
A
295 310Right-handed alpha
Helix 14
AB5
A
311 314Right-handed 310
Helix 15
AB6
A
330 352Right-handed alpha
Helix 16
AB7
A
367 377Right-handed alpha
Helix 17
AB8
A
392 400Right-handed alpha
Helix 18
AB9
A
430 444Right-handed alpha
Helix 19
AC1
A
445 461Right-handed alpha
Helix 20
AC2
A
464 479Right-handed alpha
Helix 21
AC3
B
71 82Right-handed alpha
Helix 22
AC4
B
91 100Right-handed alpha
Helix 23
AC5
B
101 106Right-handed alpha
Helix 24
AC6
B
106 112Right-handed alpha
Helix 25
AC7
B
121 141Right-handed alpha
Helix 26
AC8
B
153 157Right-handed 310
Helix 27
AC9
B
158 168Right-handed alpha
Helix 28
AD1
B
186 191Right-handed alpha
Helix 29
AD2
B
195 204Right-handed alpha
Helix 30
AD3
B
213 229Right-handed alpha
Helix 31
AD4
B
254 263Right-handed alpha
Helix 32
AD5
B
264 276Right-handed alpha
Helix 33
AD6
B
295 310Right-handed alpha
Helix 34
AD7
B
311 314Right-handed 310
Helix 35
AD8
B
330 352Right-handed alpha
Helix 36
AD9
B
367 378Right-handed alpha
Helix 37
AE1
B
392 399Right-handed alpha
Helix 38
AE2
B
414 420Right-handed alpha
Helix 39
AE3
B
430 444Right-handed alpha
Helix 40
AE4
B
445 461Right-handed alpha
Helix 41
AE5
B
464 479Right-handed alpha
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There are 6 sheets in PDB entry 6JBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
57 62parallel
Strand 3
A
16 22parallel
Strand 4
A
148 151parallel
Strand 5
A
175 179parallel
Strand 6
A
208 211parallel
Strand 7
A
242 248parallel
Strand 8
A
236 239anti-parallel
Strand 9
A
232 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
40 43anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
317 324parallel
Strand 3
A
282 289parallel
Strand 4
A
380 383parallel
Strand 5
A
407 411parallel
Strand 6
A
424 426parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
57 62parallel
Strand 3
B
16 22parallel
Strand 4
B
148 151parallel
Strand 5
B
175 179parallel
Strand 6
B
208 211parallel
Strand 7
B
242 248parallel
Strand 8
B
236 239anti-parallel
Strand 9
B
232 233anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
40 42anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 362first strand
Strand 2
B
317 324parallel
Strand 3
B
282 289parallel
Strand 4
B
380 383parallel
Strand 5
B
407 411parallel
Strand 6
B
424 426parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il