Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JBJ entry

There are 2 chains in PDB entry 6JBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13LYS 604
B
 ARG 13LYS 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6JBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 32Right-handed alpha
Helix 2
AA2
A
39 61Right-handed alpha
Helix 3
AA3
A
64 66Right-handed 310
Helix 4
AA4
A
67 72Right-handed alpha
Helix 5
AA5
A
75 124Right-handed alpha
Helix 6
AA6
A
127 135Right-handed alpha
Helix 7
AA7
A
141 159Right-handed alpha
Helix 8
AA8
A
166 180Right-handed alpha
Helix 9
AA9
A
187 203Right-handed alpha
Helix 10
AB1
A
205 231Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
241 289Right-handed alpha
Helix 13
AB4
A
309 322Right-handed alpha
Helix 14
AB5
A
325 330Right-handed alpha
Helix 15
AB6
A
331 353Right-handed alpha
Helix 16
AB7
A
354 356Right-handed 310
Helix 17
AB8
A
426 435Right-handed alpha
Helix 18
AB9
A
469 475Right-handed alpha
Helix 19
AC1
A
481 486Right-handed alpha
Helix 20
AC2
A
490 501Right-handed alpha
Helix 21
AC3
A
503 509Right-handed alpha
Helix 22
AC4
A
525 540Right-handed alpha
Helix 23
AC5
A
558 570Right-handed alpha
Helix 24
AC6
A
581 585Right-handed 310
Helix 25
AC7
B
18 32Right-handed alpha
Helix 26
AC8
B
39 61Right-handed alpha
Helix 27
AC9
B
64 66Right-handed 310
Helix 28
AD1
B
67 72Right-handed alpha
Helix 29
AD2
B
75 124Right-handed alpha
Helix 30
AD3
B
127 135Right-handed alpha
Helix 31
AD4
B
141 159Right-handed alpha
Helix 32
AD5
B
166 180Right-handed alpha
Helix 33
AD6
B
187 203Right-handed alpha
Helix 34
AD7
B
205 231Right-handed alpha
Helix 35
AD8
B
232 237Right-handed alpha
Helix 36
AD9
B
241 289Right-handed alpha
Helix 37
AE1
B
309 322Right-handed alpha
Helix 38
AE2
B
325 330Right-handed alpha
Helix 39
AE3
B
331 353Right-handed alpha
Helix 40
AE4
B
354 356Right-handed 310
Helix 41
AE5
B
426 435Right-handed alpha
Helix 42
AE6
B
469 475Right-handed alpha
Helix 43
AE7
B
481 486Right-handed alpha
Helix 44
AE8
B
490 501Right-handed alpha
Helix 45
AE9
B
503 509Right-handed alpha
Helix 46
AF1
B
525 540Right-handed alpha
Helix 47
AF2
B
558 570Right-handed alpha
Helix 48
AF3
B
581 585Right-handed 310
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There are 4 sheets in PDB entry 6JBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
444 447anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
544 546parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 410first strand
Strand 2
B
387 390anti-parallel
Strand 3
B
444 447anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 458first strand
Strand 2
B
544 546parallel
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