Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JBM entry

There are 4 chains in PDB entry 6JBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 255	HIS 446
A	SER 256	PRO 442
C	SER 256	PRO 442
D	SER 256	PRO 442

There are 7 helices in PDB entry 6JBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	258	263	Right-handed alpha
Helix 2	AA2	B	264	266	Right-handed 310
Helix 3	AA3	A	257	264	Right-handed alpha
Helix 4	AA4	C	258	263	Right-handed alpha
Helix 5	AA5	C	264	266	Right-handed 310
Helix 6	AA6	D	257	263	Right-handed alpha
Helix 7	AA7	D	264	266	Right-handed 310

There are 12 sheets in PDB entry 6JBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	288	291	anti-parallel
Strand 3	B	435	437	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	426	431	anti-parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	361	367	anti-parallel
Strand 5	B	370	375	anti-parallel
Strand 6	B	378	382	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	370	375	anti-parallel
Strand 4	A	361	367	anti-parallel
Strand 5	A	334	341	anti-parallel
Strand 6	A	425	431	anti-parallel
Strand 7	A	310	312	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	327	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	401	406	anti-parallel
Strand 4	B	412	418	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	288	291	anti-parallel
Strand 3	A	435	437	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	327	first strand
Strand 2	A	390	396	anti-parallel
Strand 3	A	401	406	anti-parallel
Strand 4	A	412	418	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	435	437	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	C	425	431	anti-parallel
Strand 3	C	334	341	anti-parallel
Strand 4	C	361	367	anti-parallel
Strand 5	C	370	375	anti-parallel
Strand 6	C	378	382	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	327	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	401	406	anti-parallel
Strand 4	C	412	418	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	288	291	anti-parallel
Strand 3	D	435	437	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	425	431	anti-parallel
Strand 3	D	334	341	anti-parallel
Strand 4	D	361	367	anti-parallel
Strand 5	D	370	375	anti-parallel
Strand 6	D	378	381	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	327	first strand
Strand 2	D	390	396	anti-parallel
Strand 3	D	401	406	anti-parallel
Strand 4	D	412	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBM