Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JBN entry

There are 2 chains in PDB entry 6JBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 50ARG 440
B
 ALA 50ALA 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6JBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 65Right-handed 310
Helix 2
AA2
A
96 117Right-handed alpha
Helix 3
AA3
A
153 156Right-handed 310
Helix 4
AA4
A
161 165Right-handed 310
Helix 5
AA5
A
181 185Right-handed 310
Helix 6
AA6
A
197 212Right-handed alpha
Helix 7
AA7
A
257 265Right-handed alpha
Helix 8
AA8
A
274 278Right-handed 310
Helix 9
AA9
A
291 297Right-handed alpha
Helix 10
AB1
A
299 308Right-handed alpha
Helix 11
AB2
A
328 332Right-handed 310
Helix 12
AB3
A
342 348Right-handed alpha
Helix 13
AB4
A
352 358Right-handed 310
Helix 14
AB5
A
392 401Right-handed alpha
Helix 15
AB6
A
403 407Right-handed 310
Helix 16
AB7
A
431 439Right-handed alpha
Helix 17
AB8
B
61 65Right-handed 310
Helix 18
AB9
B
96 117Right-handed alpha
Helix 19
AC1
B
153 156Right-handed 310
Helix 20
AC2
B
161 165Right-handed 310
Helix 21
AC3
B
181 185Right-handed 310
Helix 22
AC4
B
197 212Right-handed alpha
Helix 23
AC5
B
257 265Right-handed alpha
Helix 24
AC6
B
274 278Right-handed 310
Helix 25
AC7
B
291 297Right-handed alpha
Helix 26
AC8
B
299 308Right-handed alpha
Helix 27
AC9
B
328 332Right-handed 310
Helix 28
AD1
B
342 348Right-handed alpha
Helix 29
AD2
B
352 358Right-handed 310
Helix 30
AD3
B
392 401Right-handed alpha
Helix 31
AD4
B
403 407Right-handed 310
Helix 32
AD5
B
431 439Right-handed alpha
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There are 6 sheets in PDB entry 6JBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
B
229 230parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
376 386anti-parallel
Strand 3
A
364 370anti-parallel
Strand 4
A
216 225anti-parallel
Strand 5
A
84 92anti-parallel
Strand 6
A
189 195anti-parallel
Strand 7
A
145 151anti-parallel
Strand 8
A
409 419anti-parallel
Strand 9
A
281 290anti-parallel
Strand 10
A
376 386anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
138 139anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
B
59 60parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
376 386anti-parallel
Strand 3
B
364 370anti-parallel
Strand 4
B
216 225anti-parallel
Strand 5
B
84 92anti-parallel
Strand 6
B
189 195anti-parallel
Strand 7
B
145 151anti-parallel
Strand 8
B
409 419anti-parallel
Strand 9
B
281 290anti-parallel
Strand 10
B
376 386anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
138 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il