Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JBQ entry

There are 9 chains in PDB entry 6JBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	LEU 234
B	PHE 8	VAL 232
C	VAL 2	ASP 1341
D	GLU 16	ARG 1373
E	ALA 2	LEU 80
F	LEU 5	ARG 190
G	C 1	G 48
H	C 1	G 48
I	C 1	A 5

There are101 helices in PDB entry 6JBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	215	227	Right-handed alpha
Helix 4	AA4	A	228	232	Right-handed 310
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	87	Right-handed alpha
Helix 7	AA7	B	212	229	Right-handed alpha
Helix 8	AA8	C	4	9	Right-handed alpha
Helix 9	AA9	C	28	39	Right-handed alpha
Helix 10	AB1	C	48	57	Right-handed alpha
Helix 11	AB2	C	81	89	Right-handed alpha
Helix 12	AB3	C	163	167	Right-handed 310
Helix 13	AB4	C	207	212	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	270	280	Right-handed alpha
Helix 16	AB7	C	291	294	Right-handed 310
Helix 17	AB8	C	318	329	Right-handed alpha
Helix 18	AB9	C	347	354	Right-handed alpha
Helix 19	AC1	C	359	371	Right-handed alpha
Helix 20	AC2	C	379	389	Right-handed alpha
Helix 21	AC3	C	398	409	Right-handed alpha
Helix 22	AC4	C	421	438	Right-handed alpha
Helix 23	AC5	C	447	449	Right-handed 310
Helix 24	AC6	C	455	480	Right-handed alpha
Helix 25	AC7	C	497	508	Right-handed alpha
Helix 26	AC8	C	519	527	Right-handed alpha
Helix 27	AC9	C	551	555	Right-handed 310
Helix 28	AD1	C	670	674	Right-handed 310
Helix 29	AD2	C	675	684	Right-handed alpha
Helix 30	AD3	C	685	689	Right-handed 310
Helix 31	AD4	C	704	712	Right-handed alpha
Helix 32	AD5	C	819	825	Right-handed alpha
Helix 33	AD6	C	860	864	Right-handed 310
Helix 34	AD7	C	896	907	Right-handed alpha
Helix 35	AD8	C	942	979	Right-handed alpha
Helix 36	AD9	C	1010	1038	Right-handed alpha
Helix 37	AE1	C	1101	1106	Right-handed alpha
Helix 38	AE2	C	1109	1134	Right-handed alpha
Helix 39	AE3	C	1137	1150	Right-handed alpha
Helix 40	AE4	C	1167	1176	Right-handed alpha
Helix 41	AE5	C	1191	1202	Right-handed alpha
Helix 42	AE6	C	1271	1281	Right-handed alpha
Helix 43	AE7	C	1283	1292	Right-handed alpha
Helix 44	AE8	C	1300	1310	Right-handed alpha
Helix 45	AE9	C	1321	1332	Right-handed alpha
Helix 46	AF1	D	26	33	Right-handed alpha
Helix 47	AF2	D	94	100	Right-handed 310
Helix 48	AF3	D	123	128	Right-handed alpha
Helix 49	AF4	D	131	140	Right-handed alpha
Helix 50	AF5	D	161	168	Right-handed alpha
Helix 51	AF6	D	181	191	Right-handed alpha
Helix 52	AF7	D	194	208	Right-handed alpha
Helix 53	AF8	D	210	230	Right-handed alpha
Helix 54	AF9	D	233	236	Right-handed 310
Helix 55	AG1	D	264	283	Right-handed alpha
Helix 56	AG2	D	288	308	Right-handed alpha
Helix 57	AG3	D	336	341	Right-handed alpha
Helix 58	AG4	D	370	377	Right-handed alpha
Helix 59	AG5	D	377	388	Right-handed alpha
Helix 60	AG6	D	393	404	Right-handed alpha
Helix 61	AG7	D	408	416	Right-handed alpha
Helix 62	AG8	D	430	432	Right-handed 310
Helix 63	AG9	D	453	458	Right-handed alpha
Helix 64	AH1	D	473	483	Right-handed alpha
Helix 65	AH2	D	503	515	Right-handed alpha
Helix 66	AH3	D	529	539	Right-handed alpha
Helix 67	AH4	D	574	581	Right-handed alpha
Helix 68	AH5	D	588	592	Right-handed 310
Helix 69	AH6	D	597	612	Right-handed alpha
Helix 70	AH7	D	614	636	Right-handed alpha
Helix 71	AH8	D	649	670	Right-handed alpha
Helix 72	AH9	D	674	702	Right-handed alpha
Helix 73	AI1	D	720	728	Right-handed alpha
Helix 74	AI2	D	733	742	Right-handed alpha
Helix 75	AI3	D	768	804	Right-handed alpha
Helix 76	AI4	D	835	840	Right-handed alpha
Helix 77	AI5	D	865	876	Right-handed alpha
Helix 78	AI6	D	914	925	Right-handed alpha
Helix 79	AI7	D	1137	1147	Right-handed alpha
Helix 80	AI8	D	1216	1225	Right-handed alpha
Helix 81	AI9	D	1226	1245	Right-handed alpha
Helix 82	AJ1	D	1249	1261	Right-handed alpha
Helix 83	AJ2	D	1282	1292	Right-handed alpha
Helix 84	AJ3	D	1308	1313	Right-handed alpha
Helix 85	AJ4	D	1319	1324	Right-handed alpha
Helix 86	AJ5	D	1327	1339	Right-handed alpha
Helix 87	AJ6	D	1347	1354	Right-handed alpha
Helix 88	AJ7	D	1361	1371	Right-handed alpha
Helix 89	AJ8	E	6	13	Right-handed alpha
Helix 90	AJ9	E	17	32	Right-handed alpha
Helix 91	AK1	E	45	56	Right-handed alpha
Helix 92	AK2	E	62	80	Right-handed alpha
Helix 93	AK3	F	7	17	Right-handed alpha
Helix 94	AK4	F	21	38	Right-handed alpha
Helix 95	AK5	F	45	59	Right-handed alpha
Helix 96	AK6	F	60	64	Right-handed 310
Helix 97	AK7	F	69	92	Right-handed alpha
Helix 98	AK8	F	117	136	Right-handed alpha
Helix 99	AK9	F	139	150	Right-handed alpha
Helix 100	AL1	F	155	163	Right-handed alpha
Helix 101	AL2	F	166	186	Right-handed alpha

There are 51 sheets in PDB entry 6JBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	190	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	61	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	139	140	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	132	133	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	20	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	140	153	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	140	153	anti-parallel
Strand 3	B	175	177	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	129	134	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	117	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	333	335	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	628	629	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	637	first strand
Strand 2	C	642	645	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	701	first strand
Strand 2	C	1182	1183	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	817	818	first strand
Strand 2	C	1096	1098	anti-parallel
Strand 3	C	798	804	parallel
Strand 4	C	1227	1234	anti-parallel
Strand 5	C	1065	1068	anti-parallel
Strand 6	C	1073	1075	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	927	935	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1087	1088	first strand
Strand 2	C	1212	1213	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	447	449	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1251	1252	first strand
Strand 2	F	113	114	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	243	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	319	first strand
Strand 2	D	322	323	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	557	first strand
Strand 2	D	563	572	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	996	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1061	first strand
Strand 2	D	1105	1107	anti-parallel
Strand 3	D	1122	1123	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1079	first strand
Strand 2	D	1098	1100	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1176	1178	first strand
Strand 2	D	1161	1164	anti-parallel
Strand 3	D	1203	1204	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1280	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBQ