Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JBR entry

There are 8 chains in PDB entry 6JBR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 15	LEU 479
B	ARG 15	LEU 479
D	ARG 15	LEU 479
F	ARG 15	LEU 479
H	ARG 15	LEU 479
K	ARG 15	LEU 479
M	ARG 15	LEU 479
O	ARG 15	LEU 479

There are175 helices in PDB entry 6JBR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	52	Right-handed alpha
Helix 2	AA2	A	68	84	Right-handed alpha
Helix 3	AA3	A	91	100	Right-handed alpha
Helix 4	AA4	A	106	112	Right-handed alpha
Helix 5	AA5	A	121	141	Right-handed alpha
Helix 6	AA6	A	154	157	Right-handed 310
Helix 7	AA7	A	158	168	Right-handed alpha
Helix 8	AA8	A	186	191	Right-handed alpha
Helix 9	AA9	A	195	204	Right-handed alpha
Helix 10	AB1	A	213	228	Right-handed alpha
Helix 11	AB2	A	254	262	Right-handed alpha
Helix 12	AB3	A	264	278	Right-handed alpha
Helix 13	AB4	A	291	294	Right-handed 310
Helix 14	AB5	A	295	310	Right-handed alpha
Helix 15	AB6	A	311	314	Right-handed 310
Helix 16	AB7	A	330	352	Right-handed alpha
Helix 17	AB8	A	367	378	Right-handed alpha
Helix 18	AB9	A	392	399	Right-handed alpha
Helix 19	AC1	A	414	419	Right-handed 310
Helix 20	AC2	A	430	444	Right-handed alpha
Helix 21	AC3	A	445	461	Right-handed alpha
Helix 22	AC4	A	464	479	Right-handed alpha
Helix 23	AC5	B	42	53	Right-handed alpha
Helix 24	AC6	B	71	84	Right-handed alpha
Helix 25	AC7	B	91	100	Right-handed alpha
Helix 26	AC8	B	106	112	Right-handed alpha
Helix 27	AC9	B	121	141	Right-handed alpha
Helix 28	AD1	B	154	157	Right-handed 310
Helix 29	AD2	B	158	168	Right-handed alpha
Helix 30	AD3	B	186	191	Right-handed alpha
Helix 31	AD4	B	195	204	Right-handed alpha
Helix 32	AD5	B	213	228	Right-handed alpha
Helix 33	AD6	B	254	262	Right-handed alpha
Helix 34	AD7	B	264	278	Right-handed alpha
Helix 35	AD8	B	291	294	Right-handed 310
Helix 36	AD9	B	295	310	Right-handed alpha
Helix 37	AE1	B	311	314	Right-handed 310
Helix 38	AE2	B	330	352	Right-handed alpha
Helix 39	AE3	B	367	378	Right-handed alpha
Helix 40	AE4	B	392	399	Right-handed alpha
Helix 41	AE5	B	414	419	Right-handed 310
Helix 42	AE6	B	430	443	Right-handed alpha
Helix 43	AE7	B	445	461	Right-handed alpha
Helix 44	AE8	B	464	479	Right-handed alpha
Helix 45	AE9	D	42	53	Right-handed alpha
Helix 46	AF1	D	71	84	Right-handed alpha
Helix 47	AF2	D	91	100	Right-handed alpha
Helix 48	AF3	D	106	112	Right-handed alpha
Helix 49	AF4	D	121	141	Right-handed alpha
Helix 50	AF5	D	154	157	Right-handed 310
Helix 51	AF6	D	158	168	Right-handed alpha
Helix 52	AF7	D	186	191	Right-handed alpha
Helix 53	AF8	D	195	204	Right-handed alpha
Helix 54	AF9	D	213	229	Right-handed alpha
Helix 55	AG1	D	254	262	Right-handed alpha
Helix 56	AG2	D	264	278	Right-handed alpha
Helix 57	AG3	D	291	294	Right-handed 310
Helix 58	AG4	D	295	310	Right-handed alpha
Helix 59	AG5	D	311	314	Right-handed 310
Helix 60	AG6	D	330	352	Right-handed alpha
Helix 61	AG7	D	367	378	Right-handed alpha
Helix 62	AG8	D	392	399	Right-handed alpha
Helix 63	AG9	D	414	419	Right-handed 310
Helix 64	AH1	D	430	443	Right-handed alpha
Helix 65	AH2	D	445	463	Right-handed alpha
Helix 66	AH3	D	464	479	Right-handed alpha
Helix 67	AH4	F	42	55	Right-handed alpha
Helix 68	AH5	F	68	84	Right-handed alpha
Helix 69	AH6	F	91	100	Right-handed alpha
Helix 70	AH7	F	106	112	Right-handed alpha
Helix 71	AH8	F	121	141	Right-handed alpha
Helix 72	AH9	F	154	157	Right-handed 310
Helix 73	AI1	F	158	168	Right-handed alpha
Helix 74	AI2	F	186	191	Right-handed alpha
Helix 75	AI3	F	195	204	Right-handed alpha
Helix 76	AI4	F	213	229	Right-handed alpha
Helix 77	AI5	F	254	262	Right-handed alpha
Helix 78	AI6	F	264	278	Right-handed alpha
Helix 79	AI7	F	291	294	Right-handed 310
Helix 80	AI8	F	295	310	Right-handed alpha
Helix 81	AI9	F	311	314	Right-handed 310
Helix 82	AJ1	F	330	352	Right-handed alpha
Helix 83	AJ2	F	367	378	Right-handed alpha
Helix 84	AJ3	F	392	399	Right-handed alpha
Helix 85	AJ4	F	414	419	Right-handed 310
Helix 86	AJ5	F	430	444	Right-handed alpha
Helix 87	AJ6	F	445	463	Right-handed alpha
Helix 88	AJ7	F	464	479	Right-handed alpha
Helix 89	AJ8	H	42	55	Right-handed alpha
Helix 90	AJ9	H	68	84	Right-handed alpha
Helix 91	AK1	H	91	100	Right-handed alpha
Helix 92	AK2	H	106	112	Right-handed alpha
Helix 93	AK3	H	121	141	Right-handed alpha
Helix 94	AK4	H	154	157	Right-handed 310
Helix 95	AK5	H	158	168	Right-handed alpha
Helix 96	AK6	H	186	191	Right-handed alpha
Helix 97	AK7	H	195	204	Right-handed alpha
Helix 98	AK8	H	213	229	Right-handed alpha
Helix 99	AK9	H	254	262	Right-handed alpha
Helix 100	AL1	H	264	278	Right-handed alpha
Helix 101	AL2	H	291	294	Right-handed 310
Helix 102	AL3	H	295	310	Right-handed alpha
Helix 103	AL4	H	311	314	Right-handed 310
Helix 104	AL5	H	330	352	Right-handed alpha
Helix 105	AL6	H	367	378	Right-handed alpha
Helix 106	AL7	H	392	399	Right-handed alpha
Helix 107	AL8	H	414	419	Right-handed 310
Helix 108	AL9	H	430	443	Right-handed alpha
Helix 109	AM1	H	445	463	Right-handed alpha
Helix 110	AM2	H	464	479	Right-handed alpha
Helix 111	AM3	K	42	55	Right-handed alpha
Helix 112	AM4	K	71	84	Right-handed alpha
Helix 113	AM5	K	91	100	Right-handed alpha
Helix 114	AM6	K	106	112	Right-handed alpha
Helix 115	AM7	K	121	141	Right-handed alpha
Helix 116	AM8	K	154	157	Right-handed 310
Helix 117	AM9	K	158	168	Right-handed alpha
Helix 118	AN1	K	186	191	Right-handed alpha
Helix 119	AN2	K	195	204	Right-handed alpha
Helix 120	AN3	K	213	229	Right-handed alpha
Helix 121	AN4	K	254	262	Right-handed alpha
Helix 122	AN5	K	264	278	Right-handed alpha
Helix 123	AN6	K	295	310	Right-handed alpha
Helix 124	AN7	K	311	314	Right-handed 310
Helix 125	AN8	K	330	352	Right-handed alpha
Helix 126	AN9	K	367	378	Right-handed alpha
Helix 127	AO1	K	392	399	Right-handed alpha
Helix 128	AO2	K	414	419	Right-handed 310
Helix 129	AO3	K	430	444	Right-handed alpha
Helix 130	AO4	K	445	461	Right-handed alpha
Helix 131	AO5	K	464	479	Right-handed alpha
Helix 132	AO6	M	42	55	Right-handed alpha
Helix 133	AO7	M	68	84	Right-handed alpha
Helix 134	AO8	M	91	100	Right-handed alpha
Helix 135	AO9	M	106	112	Right-handed alpha
Helix 136	AP1	M	121	141	Right-handed alpha
Helix 137	AP2	M	154	157	Right-handed 310
Helix 138	AP3	M	158	168	Right-handed alpha
Helix 139	AP4	M	186	191	Right-handed alpha
Helix 140	AP5	M	195	204	Right-handed alpha
Helix 141	AP6	M	213	228	Right-handed alpha
Helix 142	AP7	M	254	262	Right-handed alpha
Helix 143	AP8	M	264	278	Right-handed alpha
Helix 144	AP9	M	291	294	Right-handed 310
Helix 145	AQ1	M	295	310	Right-handed alpha
Helix 146	AQ2	M	311	314	Right-handed 310
Helix 147	AQ3	M	330	352	Right-handed alpha
Helix 148	AQ4	M	367	378	Right-handed alpha
Helix 149	AQ5	M	392	399	Right-handed alpha
Helix 150	AQ6	M	414	419	Right-handed 310
Helix 151	AQ7	M	430	444	Right-handed alpha
Helix 152	AQ8	M	445	463	Right-handed alpha
Helix 153	AQ9	M	464	479	Right-handed alpha
Helix 154	AR1	O	42	53	Right-handed alpha
Helix 155	AR2	O	68	84	Right-handed alpha
Helix 156	AR3	O	91	100	Right-handed alpha
Helix 157	AR4	O	106	112	Right-handed alpha
Helix 158	AR5	O	121	141	Right-handed alpha
Helix 159	AR6	O	154	157	Right-handed 310
Helix 160	AR7	O	158	168	Right-handed alpha
Helix 161	AR8	O	186	191	Right-handed alpha
Helix 162	AR9	O	195	204	Right-handed alpha
Helix 163	AS1	O	213	229	Right-handed alpha
Helix 164	AS2	O	254	262	Right-handed alpha
Helix 165	AS3	O	264	278	Right-handed alpha
Helix 166	AS4	O	291	294	Right-handed 310
Helix 167	AS5	O	295	310	Right-handed alpha
Helix 168	AS6	O	311	314	Right-handed 310
Helix 169	AS7	O	330	352	Right-handed alpha
Helix 170	AS8	O	367	378	Right-handed alpha
Helix 171	AS9	O	392	399	Right-handed alpha
Helix 172	AT1	O	414	419	Right-handed 310
Helix 173	AT2	O	430	444	Right-handed alpha
Helix 174	AT3	O	445	463	Right-handed alpha
Helix 175	AT4	O	464	479	Right-handed alpha

There are 24 sheets in PDB entry 6JBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	58	62	parallel
Strand 3	A	16	22	parallel
Strand 4	A	148	152	parallel
Strand 5	A	175	179	parallel
Strand 6	A	208	211	parallel
Strand 7	A	242	248	parallel
Strand 8	A	236	239	anti-parallel
Strand 9	A	232	233	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	35	39	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	317	324	parallel
Strand 3	A	282	289	parallel
Strand 4	A	380	383	parallel
Strand 5	A	407	411	parallel
Strand 6	A	424	426	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	58	62	parallel
Strand 3	B	16	22	parallel
Strand 4	B	148	152	parallel
Strand 5	B	175	179	parallel
Strand 6	B	208	211	parallel
Strand 7	B	242	248	parallel
Strand 8	B	236	239	anti-parallel
Strand 9	B	232	233	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	35	39	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	317	324	parallel
Strand 3	B	282	289	parallel
Strand 4	B	380	383	parallel
Strand 5	B	407	411	parallel
Strand 6	B	424	426	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	58	62	parallel
Strand 3	D	16	22	parallel
Strand 4	D	148	152	parallel
Strand 5	D	175	179	parallel
Strand 6	D	208	211	parallel
Strand 7	D	242	248	parallel
Strand 8	D	236	239	anti-parallel
Strand 9	D	232	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	35	39	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	362	first strand
Strand 2	D	317	324	parallel
Strand 3	D	282	289	parallel
Strand 4	D	380	383	parallel
Strand 5	D	407	411	parallel
Strand 6	D	424	426	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	87	first strand
Strand 2	F	58	62	parallel
Strand 3	F	16	22	parallel
Strand 4	F	148	152	parallel
Strand 5	F	175	179	parallel
Strand 6	F	208	211	parallel
Strand 7	F	242	248	parallel
Strand 8	F	236	239	anti-parallel
Strand 9	F	232	233	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	29	first strand
Strand 2	F	35	39	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	362	first strand
Strand 2	F	317	324	parallel
Strand 3	F	282	289	parallel
Strand 4	F	380	383	parallel
Strand 5	F	407	411	parallel
Strand 6	F	424	426	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	87	first strand
Strand 2	H	58	62	parallel
Strand 3	H	16	22	parallel
Strand 4	H	148	152	parallel
Strand 5	H	175	179	parallel
Strand 6	H	208	211	parallel
Strand 7	H	242	248	parallel
Strand 8	H	236	239	anti-parallel
Strand 9	H	232	233	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	29	first strand
Strand 2	H	35	39	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	359	362	first strand
Strand 2	H	317	324	parallel
Strand 3	H	282	289	parallel
Strand 4	H	380	383	parallel
Strand 5	H	407	411	parallel
Strand 6	H	424	426	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	85	87	first strand
Strand 2	K	58	62	parallel
Strand 3	K	16	22	parallel
Strand 4	K	148	152	parallel
Strand 5	K	175	179	parallel
Strand 6	K	208	211	parallel
Strand 7	K	242	248	parallel
Strand 8	K	236	239	anti-parallel
Strand 9	K	232	233	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	29	first strand
Strand 2	K	35	39	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	359	362	first strand
Strand 2	K	317	324	parallel
Strand 3	K	282	289	parallel
Strand 4	K	380	383	parallel
Strand 5	K	407	411	parallel
Strand 6	K	424	426	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	87	first strand
Strand 2	M	58	62	parallel
Strand 3	M	16	22	parallel
Strand 4	M	148	152	parallel
Strand 5	M	175	179	parallel
Strand 6	M	208	211	parallel
Strand 7	M	242	248	parallel
Strand 8	M	236	239	anti-parallel
Strand 9	M	232	233	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	25	29	first strand
Strand 2	M	35	39	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	359	362	first strand
Strand 2	M	317	324	parallel
Strand 3	M	282	289	parallel
Strand 4	M	380	383	parallel
Strand 5	M	407	411	parallel
Strand 6	M	424	426	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	85	87	first strand
Strand 2	O	58	62	parallel
Strand 3	O	16	22	parallel
Strand 4	O	148	152	parallel
Strand 5	O	175	179	parallel
Strand 6	O	208	211	parallel
Strand 7	O	243	248	parallel
Strand 8	O	236	238	anti-parallel
Strand 9	O	232	233	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	25	29	first strand
Strand 2	O	35	39	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	359	362	first strand
Strand 2	O	317	324	parallel
Strand 3	O	282	289	parallel
Strand 4	O	380	383	parallel
Strand 5	O	407	411	parallel
Strand 6	O	424	426	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JBR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBR