Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JBU entry

There are 2 chains in PDB entry 6JBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 198	ALA 464
B	LYS 29	ALA 350

There are 9 helices in PDB entry 6JBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	255	262	Right-handed alpha
Helix 2	AA2	A	376	378	Right-handed 310
Helix 3	AA3	B	71	75	Right-handed 310
Helix 4	AA4	B	76	82	Right-handed 310
Helix 5	AA5	B	120	126	Right-handed alpha
Helix 6	AA6	B	191	196	Right-handed alpha
Helix 7	AA7	B	310	312	Right-handed 310
Helix 8	AA8	B	313	322	Right-handed alpha
Helix 9	AA9	B	344	348	Right-handed 310

There are 7 sheets in PDB entry 6JBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	218	first strand
Strand 2	A	451	460	anti-parallel
Strand 3	A	443	448	anti-parallel
Strand 4	A	432	438	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	237	241	anti-parallel
Strand 3	A	249	253	anti-parallel
Strand 4	A	266	269	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	305	311	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	336	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	352	358	anti-parallel
Strand 4	A	365	374	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	384	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	406	412	anti-parallel
Strand 4	A	417	424	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	62	64	parallel
Strand 4	B	87	89	parallel
Strand 5	B	108	110	parallel
Strand 6	B	132	134	parallel
Strand 7	B	158	160	parallel
Strand 8	B	179	181	parallel
Strand 9	B	203	205	parallel
Strand 10	B	229	231	parallel
Strand 11	B	251	253	parallel
Strand 12	B	275	277	parallel
Strand 13	B	299	301	parallel
Strand 14	B	328	330	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	334	336	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JBU