Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JC5 entry

There are 16 chains in PDB entry 6JC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	CYS 62
A	SER 66	LYS 225
B	GLY 3	CYS 62
B	SER 66	LYS 225
C	GLY 3	CYS 62
C	SER 66	LYS 225
D	GLY 3	CYS 62
D	SER 66	LYS 225
E	LEU 4	CYS 62
E	SER 66	LYS 225
F	LEU 4	CYS 62
F	SER 66	LYS 225
G	GLY 3	CYS 62
G	SER 66	LYS 225
H	LEU 4	CYS 62
H	SER 66	LYS 225

There are 24 helices in PDB entry 6JC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	62	Right-handed 310
Helix 2	AA2	A	78	83	Right-handed alpha
Helix 3	AA3	A	182	186	Right-handed 310
Helix 4	AA4	B	54	62	Right-handed 310
Helix 5	AA5	B	78	83	Right-handed alpha
Helix 6	AA6	B	182	186	Right-handed 310
Helix 7	AA7	C	54	62	Right-handed 310
Helix 8	AA8	C	78	83	Right-handed alpha
Helix 9	AA9	C	182	186	Right-handed 310
Helix 10	AB1	D	54	62	Right-handed 310
Helix 11	AB2	D	78	83	Right-handed alpha
Helix 12	AB3	D	182	186	Right-handed 310
Helix 13	AB4	E	54	62	Right-handed 310
Helix 14	AB5	E	78	83	Right-handed alpha
Helix 15	AB6	E	182	186	Right-handed 310
Helix 16	AB7	F	54	62	Right-handed 310
Helix 17	AB8	F	78	83	Right-handed alpha
Helix 18	AB9	F	182	186	Right-handed 310
Helix 19	AC1	G	54	62	Right-handed 310
Helix 20	AC2	G	78	83	Right-handed alpha
Helix 21	AC3	G	182	186	Right-handed 310
Helix 22	AC4	H	54	62	Right-handed 310
Helix 23	AC5	H	78	83	Right-handed alpha
Helix 24	AC6	H	182	186	Right-handed 310

There are 8 sheets in PDB entry 6JC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	208	218	parallel
Strand 3	A	192	204	anti-parallel
Strand 4	A	143	150	anti-parallel
Strand 5	A	153	164	anti-parallel
Strand 6	A	167	179	anti-parallel
Strand 7	A	88	96	anti-parallel
Strand 8	A	101	111	anti-parallel
Strand 9	A	114	124	anti-parallel
Strand 10	A	9	19	parallel
Strand 11	A	22	33	anti-parallel
Strand 12	A	38	47	anti-parallel
Strand 13	A	208	218	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	208	218	parallel
Strand 3	B	192	204	anti-parallel
Strand 4	B	143	150	anti-parallel
Strand 5	B	153	164	anti-parallel
Strand 6	B	167	179	anti-parallel
Strand 7	B	88	96	anti-parallel
Strand 8	B	101	111	anti-parallel
Strand 9	B	114	124	anti-parallel
Strand 10	B	9	19	parallel
Strand 11	B	22	33	anti-parallel
Strand 12	B	38	47	anti-parallel
Strand 13	B	208	218	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	208	218	parallel
Strand 3	C	192	204	anti-parallel
Strand 4	C	143	150	anti-parallel
Strand 5	C	153	164	anti-parallel
Strand 6	C	167	179	anti-parallel
Strand 7	C	88	96	anti-parallel
Strand 8	C	101	111	anti-parallel
Strand 9	C	114	124	anti-parallel
Strand 10	C	9	19	parallel
Strand 11	C	22	33	anti-parallel
Strand 12	C	38	47	anti-parallel
Strand 13	C	208	218	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	208	218	parallel
Strand 3	D	192	204	anti-parallel
Strand 4	D	143	150	anti-parallel
Strand 5	D	153	164	anti-parallel
Strand 6	D	167	179	anti-parallel
Strand 7	D	88	96	anti-parallel
Strand 8	D	101	111	anti-parallel
Strand 9	D	114	124	anti-parallel
Strand 10	D	9	19	parallel
Strand 11	D	22	33	anti-parallel
Strand 12	D	38	47	anti-parallel
Strand 13	D	208	218	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	208	218	parallel
Strand 3	E	192	204	anti-parallel
Strand 4	E	143	150	anti-parallel
Strand 5	E	153	164	anti-parallel
Strand 6	E	167	179	anti-parallel
Strand 7	E	88	96	anti-parallel
Strand 8	E	101	111	anti-parallel
Strand 9	E	114	124	anti-parallel
Strand 10	E	9	19	parallel
Strand 11	E	22	33	anti-parallel
Strand 12	E	38	47	anti-parallel
Strand 13	E	208	218	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	208	218	parallel
Strand 3	F	192	204	anti-parallel
Strand 4	F	143	150	anti-parallel
Strand 5	F	153	164	anti-parallel
Strand 6	F	167	179	anti-parallel
Strand 7	F	88	96	anti-parallel
Strand 8	F	101	111	anti-parallel
Strand 9	F	114	124	anti-parallel
Strand 10	F	9	19	parallel
Strand 11	F	22	33	anti-parallel
Strand 12	F	38	47	anti-parallel
Strand 13	F	208	218	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	208	218	parallel
Strand 3	G	192	204	anti-parallel
Strand 4	G	143	150	anti-parallel
Strand 5	G	153	164	anti-parallel
Strand 6	G	167	179	anti-parallel
Strand 7	G	88	96	anti-parallel
Strand 8	G	101	111	anti-parallel
Strand 9	G	114	124	anti-parallel
Strand 10	G	9	19	parallel
Strand 11	G	22	33	anti-parallel
Strand 12	G	38	47	anti-parallel
Strand 13	G	208	218	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	208	218	parallel
Strand 3	H	192	204	anti-parallel
Strand 4	H	143	150	anti-parallel
Strand 5	H	153	164	anti-parallel
Strand 6	H	167	179	anti-parallel
Strand 7	H	88	96	anti-parallel
Strand 8	H	101	111	anti-parallel
Strand 9	H	114	124	anti-parallel
Strand 10	H	9	19	parallel
Strand 11	H	22	33	anti-parallel
Strand 12	H	38	47	anti-parallel
Strand 13	H	208	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC5