Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JC7 entry

There are 4 chains in PDB entry 6JC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	LEU 522
B	GLY 6	LEU 522
C	GLY 6	LEU 522
D	GLY 6	LEU 522

There are 85 helices in PDB entry 6JC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed alpha
Helix 3	AA3	A	64	77	Right-handed alpha
Helix 4	AA4	A	88	107	Right-handed alpha
Helix 5	AA5	A	119	160	Right-handed alpha
Helix 6	AA6	A	166	172	Right-handed 310
Helix 7	AA7	A	179	196	Right-handed alpha
Helix 8	AA8	A	211	216	Right-handed alpha
Helix 9	AA9	A	220	225	Right-handed alpha
Helix 10	AB1	A	226	228	Right-handed 310
Helix 11	AB2	A	244	252	Right-handed alpha
Helix 12	AB3	A	285	289	Right-handed 310
Helix 13	AB4	A	294	309	Right-handed alpha
Helix 14	AB5	A	328	333	Right-handed alpha
Helix 15	AB6	A	343	348	Right-handed 310
Helix 16	AB7	A	366	371	Right-handed alpha
Helix 17	AB8	A	378	421	Right-handed alpha
Helix 18	AB9	A	447	456	Right-handed alpha
Helix 19	AC1	A	458	472	Right-handed alpha
Helix 20	AC2	A	494	514	Right-handed alpha
Helix 21	AC3	A	516	521	Right-handed alpha
Helix 22	AC4	B	12	22	Right-handed alpha
Helix 23	AC5	B	52	57	Right-handed alpha
Helix 24	AC6	B	64	77	Right-handed alpha
Helix 25	AC7	B	88	107	Right-handed alpha
Helix 26	AC8	B	119	160	Right-handed alpha
Helix 27	AC9	B	166	172	Right-handed 310
Helix 28	AD1	B	179	195	Right-handed alpha
Helix 29	AD2	B	211	216	Right-handed alpha
Helix 30	AD3	B	220	225	Right-handed alpha
Helix 31	AD4	B	226	228	Right-handed 310
Helix 32	AD5	B	244	252	Right-handed alpha
Helix 33	AD6	B	285	289	Right-handed 310
Helix 34	AD7	B	294	309	Right-handed alpha
Helix 35	AD8	B	328	333	Right-handed alpha
Helix 36	AD9	B	343	348	Right-handed 310
Helix 37	AE1	B	366	371	Right-handed alpha
Helix 38	AE2	B	378	394	Right-handed alpha
Helix 39	AE3	B	397	421	Right-handed alpha
Helix 40	AE4	B	447	456	Right-handed alpha
Helix 41	AE5	B	458	472	Right-handed alpha
Helix 42	AE6	B	494	514	Right-handed alpha
Helix 43	AE7	B	516	521	Right-handed alpha
Helix 44	AE8	C	12	22	Right-handed alpha
Helix 45	AE9	C	52	57	Right-handed alpha
Helix 46	AF1	C	64	77	Right-handed alpha
Helix 47	AF2	C	88	107	Right-handed alpha
Helix 48	AF3	C	119	157	Right-handed alpha
Helix 49	AF4	C	166	172	Right-handed 310
Helix 50	AF5	C	179	196	Right-handed alpha
Helix 51	AF6	C	211	216	Right-handed alpha
Helix 52	AF7	C	220	225	Right-handed alpha
Helix 53	AF8	C	226	228	Right-handed 310
Helix 54	AF9	C	244	252	Right-handed alpha
Helix 55	AG1	C	285	289	Right-handed 310
Helix 56	AG2	C	294	309	Right-handed alpha
Helix 57	AG3	C	328	333	Right-handed alpha
Helix 58	AG4	C	343	348	Right-handed 310
Helix 59	AG5	C	366	371	Right-handed alpha
Helix 60	AG6	C	378	421	Right-handed alpha
Helix 61	AG7	C	447	456	Right-handed alpha
Helix 62	AG8	C	458	472	Right-handed alpha
Helix 63	AG9	C	494	514	Right-handed alpha
Helix 64	AH1	C	516	521	Right-handed alpha
Helix 65	AH2	D	12	22	Right-handed alpha
Helix 66	AH3	D	52	57	Right-handed alpha
Helix 67	AH4	D	64	77	Right-handed alpha
Helix 68	AH5	D	88	107	Right-handed alpha
Helix 69	AH6	D	119	160	Right-handed alpha
Helix 70	AH7	D	166	172	Right-handed 310
Helix 71	AH8	D	179	195	Right-handed alpha
Helix 72	AH9	D	211	216	Right-handed alpha
Helix 73	AI1	D	220	225	Right-handed alpha
Helix 74	AI2	D	226	228	Right-handed 310
Helix 75	AI3	D	244	252	Right-handed alpha
Helix 76	AI4	D	285	289	Right-handed 310
Helix 77	AI5	D	294	309	Right-handed alpha
Helix 78	AI6	D	328	333	Right-handed alpha
Helix 79	AI7	D	343	348	Right-handed 310
Helix 80	AI8	D	366	371	Right-handed alpha
Helix 81	AI9	D	378	421	Right-handed alpha
Helix 82	AJ1	D	447	456	Right-handed alpha
Helix 83	AJ2	D	458	472	Right-handed alpha
Helix 84	AJ3	D	494	514	Right-handed alpha
Helix 85	AJ4	D	516	521	Right-handed alpha

There are 16 sheets in PDB entry 6JC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	45	50	anti-parallel
Strand 4	A	473	474	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	339	342	anti-parallel
Strand 4	A	312	315	parallel
Strand 5	A	276	281	parallel
Strand 6	A	199	203	parallel
Strand 7	A	234	237	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	265	273	parallel
Strand 3	A	254	261	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	484	487	anti-parallel
Strand 4	A	477	478	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	473	474	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	339	342	anti-parallel
Strand 4	B	312	315	parallel
Strand 5	B	276	281	parallel
Strand 6	B	199	203	parallel
Strand 7	B	234	237	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	265	273	parallel
Strand 3	B	254	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	434	439	anti-parallel
Strand 3	B	484	487	anti-parallel
Strand 4	B	477	478	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	45	50	anti-parallel
Strand 4	C	473	474	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	339	342	anti-parallel
Strand 4	C	312	315	parallel
Strand 5	C	276	281	parallel
Strand 6	C	199	203	parallel
Strand 7	C	234	237	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	265	273	parallel
Strand 3	C	254	261	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	431	first strand
Strand 2	C	434	439	anti-parallel
Strand 3	C	484	487	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	35	39	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	473	474	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	354	359	anti-parallel
Strand 3	D	339	342	anti-parallel
Strand 4	D	312	315	parallel
Strand 5	D	276	281	parallel
Strand 6	D	199	203	parallel
Strand 7	D	234	237	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	265	273	parallel
Strand 3	D	254	261	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	434	439	anti-parallel
Strand 3	D	484	487	anti-parallel
Strand 4	D	477	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC7