Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JC9 entry

There are 4 chains in PDB entry 6JC9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	LEU 522
B	GLY 6	LEU 522
C	GLY 6	LEU 522
D	GLY 6	LEU 522

There are 86 helices in PDB entry 6JC9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	64	77	Right-handed alpha
Helix 4	AA4	A	88	107	Right-handed alpha
Helix 5	AA5	A	119	160	Right-handed alpha
Helix 6	AA6	A	168	172	Right-handed 310
Helix 7	AA7	A	178	178	Right-handed 310
Helix 8	AA8	A	179	196	Right-handed alpha
Helix 9	AA9	A	213	218	Right-handed 310
Helix 10	AB1	A	220	225	Right-handed alpha
Helix 11	AB2	A	226	228	Right-handed 310
Helix 12	AB3	A	244	251	Right-handed alpha
Helix 13	AB4	A	285	289	Right-handed 310
Helix 14	AB5	A	294	309	Right-handed alpha
Helix 15	AB6	A	328	333	Right-handed alpha
Helix 16	AB7	A	343	348	Right-handed 310
Helix 17	AB8	A	366	371	Right-handed alpha
Helix 18	AB9	A	378	421	Right-handed alpha
Helix 19	AC1	A	447	456	Right-handed alpha
Helix 20	AC2	A	458	472	Right-handed alpha
Helix 21	AC3	A	494	514	Right-handed alpha
Helix 22	AC4	A	516	521	Right-handed alpha
Helix 23	AC5	B	12	22	Right-handed alpha
Helix 24	AC6	B	53	57	Right-handed 310
Helix 25	AC7	B	64	77	Right-handed alpha
Helix 26	AC8	B	88	107	Right-handed alpha
Helix 27	AC9	B	119	160	Right-handed alpha
Helix 28	AD1	B	168	172	Right-handed 310
Helix 29	AD2	B	178	178	Right-handed 310
Helix 30	AD3	B	179	196	Right-handed alpha
Helix 31	AD4	B	213	218	Right-handed 310
Helix 32	AD5	B	220	225	Right-handed alpha
Helix 33	AD6	B	226	231	Right-handed 310
Helix 34	AD7	B	244	251	Right-handed alpha
Helix 35	AD8	B	285	289	Right-handed 310
Helix 36	AD9	B	294	309	Right-handed alpha
Helix 37	AE1	B	328	333	Right-handed alpha
Helix 38	AE2	B	343	348	Right-handed 310
Helix 39	AE3	B	366	371	Right-handed alpha
Helix 40	AE4	B	378	421	Right-handed alpha
Helix 41	AE5	B	447	456	Right-handed alpha
Helix 42	AE6	B	458	472	Right-handed alpha
Helix 43	AE7	B	494	514	Right-handed alpha
Helix 44	AE8	B	516	521	Right-handed alpha
Helix 45	AE9	C	12	22	Right-handed alpha
Helix 46	AF1	C	53	57	Right-handed 310
Helix 47	AF2	C	64	77	Right-handed alpha
Helix 48	AF3	C	88	107	Right-handed alpha
Helix 49	AF4	C	119	160	Right-handed alpha
Helix 50	AF5	C	168	172	Right-handed 310
Helix 51	AF6	C	178	178	Right-handed 310
Helix 52	AF7	C	179	196	Right-handed alpha
Helix 53	AF8	C	213	218	Right-handed 310
Helix 54	AF9	C	220	225	Right-handed alpha
Helix 55	AG1	C	226	228	Right-handed 310
Helix 56	AG2	C	244	251	Right-handed alpha
Helix 57	AG3	C	285	289	Right-handed 310
Helix 58	AG4	C	294	309	Right-handed alpha
Helix 59	AG5	C	328	333	Right-handed alpha
Helix 60	AG6	C	343	348	Right-handed 310
Helix 61	AG7	C	366	371	Right-handed alpha
Helix 62	AG8	C	378	421	Right-handed alpha
Helix 63	AG9	C	447	456	Right-handed alpha
Helix 64	AH1	C	458	472	Right-handed alpha
Helix 65	AH2	C	494	514	Right-handed alpha
Helix 66	AH3	C	516	521	Right-handed alpha
Helix 67	AH4	D	12	22	Right-handed alpha
Helix 68	AH5	D	53	57	Right-handed 310
Helix 69	AH6	D	64	77	Right-handed alpha
Helix 70	AH7	D	88	107	Right-handed alpha
Helix 71	AH8	D	119	160	Right-handed alpha
Helix 72	AH9	D	179	196	Right-handed alpha
Helix 73	AI1	D	213	218	Right-handed 310
Helix 74	AI2	D	220	225	Right-handed alpha
Helix 75	AI3	D	226	228	Right-handed 310
Helix 76	AI4	D	244	251	Right-handed alpha
Helix 77	AI5	D	285	289	Right-handed 310
Helix 78	AI6	D	294	309	Right-handed alpha
Helix 79	AI7	D	328	333	Right-handed alpha
Helix 80	AI8	D	343	348	Right-handed 310
Helix 81	AI9	D	366	371	Right-handed alpha
Helix 82	AJ1	D	378	421	Right-handed alpha
Helix 83	AJ2	D	447	456	Right-handed alpha
Helix 84	AJ3	D	458	472	Right-handed alpha
Helix 85	AJ4	D	494	514	Right-handed alpha
Helix 86	AJ5	D	516	521	Right-handed alpha

There are 16 sheets in PDB entry 6JC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	45	50	anti-parallel
Strand 4	A	473	474	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	339	342	anti-parallel
Strand 4	A	312	315	parallel
Strand 5	A	276	281	parallel
Strand 6	A	199	203	parallel
Strand 7	A	234	237	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	265	273	parallel
Strand 3	A	254	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	484	487	anti-parallel
Strand 4	A	477	478	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	473	474	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	339	342	anti-parallel
Strand 4	B	312	315	parallel
Strand 5	B	276	281	parallel
Strand 6	B	199	203	parallel
Strand 7	B	234	237	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	265	273	parallel
Strand 3	B	254	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	434	439	anti-parallel
Strand 3	B	484	487	anti-parallel
Strand 4	B	477	478	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	45	50	anti-parallel
Strand 4	C	473	474	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	339	342	anti-parallel
Strand 4	C	312	315	parallel
Strand 5	C	276	281	parallel
Strand 6	C	199	203	parallel
Strand 7	C	234	237	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	265	273	parallel
Strand 3	C	254	262	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	431	first strand
Strand 2	C	434	439	anti-parallel
Strand 3	C	484	487	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	35	39	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	473	474	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	354	359	anti-parallel
Strand 3	D	339	342	anti-parallel
Strand 4	D	312	315	parallel
Strand 5	D	276	281	parallel
Strand 6	D	199	203	parallel
Strand 7	D	234	237	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	260	first strand
Strand 2	D	267	273	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	434	439	anti-parallel
Strand 3	D	484	487	anti-parallel
Strand 4	D	477	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JC9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JC9