Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCA entry

There are 2 chains in PDB entry 6JCA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	SER 523
B	GLY 6	SER 523

There are 37 helices in PDB entry 6JCA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	88	107	Right-handed alpha
Helix 4	AA4	A	119	158	Right-handed alpha
Helix 5	AA5	A	166	172	Right-handed 310
Helix 6	AA6	A	178	196	Right-handed alpha
Helix 7	AA7	A	227	231	Right-handed 310
Helix 8	AA8	A	241	251	Right-handed alpha
Helix 9	AA9	A	285	289	Right-handed 310
Helix 10	AB1	A	294	309	Right-handed alpha
Helix 11	AB2	A	328	334	Right-handed alpha
Helix 12	AB3	A	364	370	Right-handed 310
Helix 13	AB4	A	378	421	Right-handed alpha
Helix 14	AB5	A	447	456	Right-handed alpha
Helix 15	AB6	A	458	472	Right-handed alpha
Helix 16	AB7	A	479	482	Right-handed 310
Helix 17	AB8	A	494	514	Right-handed alpha
Helix 18	AB9	A	516	521	Right-handed alpha
Helix 19	AC1	B	12	23	Right-handed alpha
Helix 20	AC2	B	53	57	Right-handed 310
Helix 21	AC3	B	64	77	Right-handed alpha
Helix 22	AC4	B	88	107	Right-handed alpha
Helix 23	AC5	B	119	158	Right-handed alpha
Helix 24	AC6	B	178	196	Right-handed alpha
Helix 25	AC7	B	205	212	Right-handed alpha
Helix 26	AC8	B	227	231	Right-handed 310
Helix 27	AC9	B	241	251	Right-handed alpha
Helix 28	AD1	B	285	289	Right-handed 310
Helix 29	AD2	B	294	309	Right-handed alpha
Helix 30	AD3	B	328	334	Right-handed alpha
Helix 31	AD4	B	364	369	Right-handed 310
Helix 32	AD5	B	378	421	Right-handed alpha
Helix 33	AD6	B	447	456	Right-handed alpha
Helix 34	AD7	B	458	472	Right-handed alpha
Helix 35	AD8	B	479	482	Right-handed 310
Helix 36	AD9	B	494	514	Right-handed alpha
Helix 37	AE1	B	516	521	Right-handed alpha

There are 8 sheets in PDB entry 6JCA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	45	50	anti-parallel
Strand 4	A	473	474	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	339	342	anti-parallel
Strand 4	A	312	315	parallel
Strand 5	A	276	281	parallel
Strand 6	A	199	203	parallel
Strand 7	A	234	237	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	265	272	parallel
Strand 3	A	255	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	484	487	anti-parallel
Strand 4	A	477	478	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	473	474	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	339	342	anti-parallel
Strand 4	B	312	315	parallel
Strand 5	B	276	281	parallel
Strand 6	B	199	202	parallel
Strand 7	B	234	236	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	265	272	parallel
Strand 3	B	255	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	434	439	anti-parallel
Strand 3	B	484	487	anti-parallel
Strand 4	B	477	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCA