Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCB entry

There are 4 chains in PDB entry 6JCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 6	SER 523
C	GLY 6	SER 523
B	GLY 6	SER 523
D	SER 5	SER 523

There are 70 helices in PDB entry 6JCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed alpha
Helix 3	AA3	A	64	77	Right-handed alpha
Helix 4	AA4	A	88	107	Right-handed alpha
Helix 5	AA5	A	119	158	Right-handed alpha
Helix 6	AA6	A	166	169	Right-handed 310
Helix 7	AA7	A	179	195	Right-handed alpha
Helix 8	AA8	A	241	252	Right-handed alpha
Helix 9	AA9	A	285	289	Right-handed 310
Helix 10	AB1	A	294	309	Right-handed alpha
Helix 11	AB2	A	328	333	Right-handed alpha
Helix 12	AB3	A	361	363	Right-handed 310
Helix 13	AB4	A	378	393	Right-handed alpha
Helix 14	AB5	A	393	421	Right-handed alpha
Helix 15	AB6	A	447	457	Right-handed alpha
Helix 16	AB7	A	458	472	Right-handed alpha
Helix 17	AB8	A	494	514	Right-handed alpha
Helix 18	AB9	A	516	521	Right-handed alpha
Helix 19	AC1	C	12	22	Right-handed alpha
Helix 20	AC2	C	52	57	Right-handed alpha
Helix 21	AC3	C	64	77	Right-handed alpha
Helix 22	AC4	C	89	107	Right-handed alpha
Helix 23	AC5	C	119	158	Right-handed alpha
Helix 24	AC6	C	166	169	Right-handed 310
Helix 25	AC7	C	180	195	Right-handed alpha
Helix 26	AC8	C	241	252	Right-handed alpha
Helix 27	AC9	C	285	289	Right-handed 310
Helix 28	AD1	C	294	309	Right-handed alpha
Helix 29	AD2	C	328	333	Right-handed alpha
Helix 30	AD3	C	361	363	Right-handed 310
Helix 31	AD4	C	378	421	Right-handed alpha
Helix 32	AD5	C	447	457	Right-handed alpha
Helix 33	AD6	C	458	472	Right-handed alpha
Helix 34	AD7	C	494	514	Right-handed alpha
Helix 35	AD8	C	516	521	Right-handed alpha
Helix 36	AD9	B	12	22	Right-handed alpha
Helix 37	AE1	B	52	57	Right-handed alpha
Helix 38	AE2	B	64	77	Right-handed alpha
Helix 39	AE3	B	89	107	Right-handed alpha
Helix 40	AE4	B	119	158	Right-handed alpha
Helix 41	AE5	B	166	169	Right-handed 310
Helix 42	AE6	B	179	195	Right-handed alpha
Helix 43	AE7	B	241	252	Right-handed alpha
Helix 44	AE8	B	286	289	Right-handed 310
Helix 45	AE9	B	294	309	Right-handed alpha
Helix 46	AF1	B	328	333	Right-handed alpha
Helix 47	AF2	B	361	363	Right-handed 310
Helix 48	AF3	B	378	421	Right-handed alpha
Helix 49	AF4	B	447	457	Right-handed alpha
Helix 50	AF5	B	458	472	Right-handed alpha
Helix 51	AF6	B	494	514	Right-handed alpha
Helix 52	AF7	B	516	521	Right-handed alpha
Helix 53	AF8	D	12	22	Right-handed alpha
Helix 54	AF9	D	52	57	Right-handed alpha
Helix 55	AG1	D	64	77	Right-handed alpha
Helix 56	AG2	D	89	107	Right-handed alpha
Helix 57	AG3	D	119	158	Right-handed alpha
Helix 58	AG4	D	166	172	Right-handed 310
Helix 59	AG5	D	180	195	Right-handed alpha
Helix 60	AG6	D	241	252	Right-handed alpha
Helix 61	AG7	D	286	289	Right-handed 310
Helix 62	AG8	D	294	309	Right-handed alpha
Helix 63	AG9	D	328	333	Right-handed alpha
Helix 64	AH1	D	361	363	Right-handed 310
Helix 65	AH2	D	364	368	Right-handed 310
Helix 66	AH3	D	378	421	Right-handed alpha
Helix 67	AH4	D	447	457	Right-handed alpha
Helix 68	AH5	D	458	472	Right-handed alpha
Helix 69	AH6	D	494	514	Right-handed alpha
Helix 70	AH7	D	516	521	Right-handed alpha

There are 18 sheets in PDB entry 6JCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	45	50	anti-parallel
Strand 4	A	473	474	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	354	359	anti-parallel
Strand 3	A	339	342	anti-parallel
Strand 4	A	312	315	parallel
Strand 5	A	276	281	parallel
Strand 6	A	199	203	parallel
Strand 7	A	234	237	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	265	273	parallel
Strand 3	A	254	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	431	first strand
Strand 2	A	434	439	anti-parallel
Strand 3	A	484	487	anti-parallel
Strand 4	A	477	478	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	45	50	anti-parallel
Strand 4	C	473	474	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	117	first strand
Strand 2	C	354	359	anti-parallel
Strand 3	C	339	342	anti-parallel
Strand 4	C	312	315	parallel
Strand 5	C	276	281	parallel
Strand 6	C	199	203	parallel
Strand 7	C	234	237	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	265	273	parallel
Strand 3	C	254	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	431	first strand
Strand 2	C	434	439	anti-parallel
Strand 3	C	484	487	anti-parallel
Strand 4	C	477	478	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	45	50	anti-parallel
Strand 4	B	473	474	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	339	342	anti-parallel
Strand 4	B	312	315	parallel
Strand 5	B	276	281	parallel
Strand 6	B	199	203	parallel
Strand 7	B	235	237	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	265	273	parallel
Strand 3	B	254	262	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	291	292	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	431	first strand
Strand 2	B	434	439	anti-parallel
Strand 3	B	484	487	anti-parallel
Strand 4	B	477	478	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	35	39	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	473	474	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	354	359	anti-parallel
Strand 3	D	339	342	anti-parallel
Strand 4	D	312	315	parallel
Strand 5	D	276	281	parallel
Strand 6	D	199	203	parallel
Strand 7	D	234	237	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	265	273	parallel
Strand 3	D	254	262	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	291	292	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	431	first strand
Strand 2	D	434	439	anti-parallel
Strand 3	D	484	487	anti-parallel
Strand 4	D	477	478	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCB