Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCL entry

There are 7 chains in PDB entry 6JCL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	ASN 222
B	GLN 6	ASN 222
C	GLN 5	ARG 220
D	GLN 6	ARG 220
G	GLN 5	LEU 223
H	GLN 6	GLU 221
E	GLN 6	ALA 56

There are 97 helices in PDB entry 6JCL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	24	37	Right-handed alpha
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	72	83	Right-handed alpha
Helix 5	AA5	A	94	108	Right-handed alpha
Helix 6	AA6	A	110	112	Right-handed 310
Helix 7	AA7	A	120	125	Right-handed alpha
Helix 8	AA8	A	126	128	Right-handed 310
Helix 9	AA9	A	141	143	Right-handed 310
Helix 10	AB1	A	144	155	Right-handed alpha
Helix 11	AB2	A	168	175	Right-handed 310
Helix 12	AB3	A	179	195	Right-handed alpha
Helix 13	AB4	B	8	21	Right-handed alpha
Helix 14	AB5	B	24	37	Right-handed alpha
Helix 15	AB6	B	45	59	Right-handed alpha
Helix 16	AB7	B	72	83	Right-handed alpha
Helix 17	AB8	B	94	108	Right-handed alpha
Helix 18	AB9	B	110	112	Right-handed 310
Helix 19	AC1	B	120	125	Right-handed alpha
Helix 20	AC2	B	126	128	Right-handed 310
Helix 21	AC3	B	141	143	Right-handed 310
Helix 22	AC4	B	144	155	Right-handed alpha
Helix 23	AC5	B	168	172	Right-handed 310
Helix 24	AC6	B	179	195	Right-handed alpha
Helix 25	AC7	C	8	21	Right-handed alpha
Helix 26	AC8	C	24	37	Right-handed alpha
Helix 27	AC9	C	45	59	Right-handed alpha
Helix 28	AD1	C	72	83	Right-handed alpha
Helix 29	AD2	C	94	108	Right-handed alpha
Helix 30	AD3	C	110	112	Right-handed 310
Helix 31	AD4	C	120	125	Right-handed alpha
Helix 32	AD5	C	126	128	Right-handed 310
Helix 33	AD6	C	141	143	Right-handed 310
Helix 34	AD7	C	144	155	Right-handed alpha
Helix 35	AD8	C	168	175	Right-handed 310
Helix 36	AD9	C	179	195	Right-handed alpha
Helix 37	AE1	D	8	21	Right-handed alpha
Helix 38	AE2	D	24	37	Right-handed alpha
Helix 39	AE3	D	45	59	Right-handed alpha
Helix 40	AE4	D	72	83	Right-handed alpha
Helix 41	AE5	D	94	108	Right-handed alpha
Helix 42	AE6	D	110	112	Right-handed 310
Helix 43	AE7	D	120	125	Right-handed alpha
Helix 44	AE8	D	126	128	Right-handed 310
Helix 45	AE9	D	141	143	Right-handed 310
Helix 46	AF1	D	144	155	Right-handed alpha
Helix 47	AF2	D	168	172	Right-handed 310
Helix 48	AF3	D	179	195	Right-handed alpha
Helix 49	AF4	G	8	21	Right-handed alpha
Helix 50	AF5	G	24	37	Right-handed alpha
Helix 51	AF6	G	45	59	Right-handed alpha
Helix 52	AF7	G	72	83	Right-handed alpha
Helix 53	AF8	G	94	108	Right-handed alpha
Helix 54	AF9	G	110	112	Right-handed 310
Helix 55	AG1	G	120	125	Right-handed alpha
Helix 56	AG2	G	126	128	Right-handed 310
Helix 57	AG3	G	141	143	Right-handed 310
Helix 58	AG4	G	144	155	Right-handed alpha
Helix 59	AG5	G	168	175	Right-handed 310
Helix 60	AG6	G	179	195	Right-handed alpha
Helix 61	AG7	H	8	21	Right-handed alpha
Helix 62	AG8	H	24	37	Right-handed alpha
Helix 63	AG9	H	45	59	Right-handed alpha
Helix 64	AH1	H	72	83	Right-handed alpha
Helix 65	AH2	H	94	108	Right-handed alpha
Helix 66	AH3	H	110	112	Right-handed 310
Helix 67	AH4	H	120	125	Right-handed alpha
Helix 68	AH5	H	126	128	Right-handed 310
Helix 69	AH6	H	141	143	Right-handed 310
Helix 70	AH7	H	144	155	Right-handed alpha
Helix 71	AH8	H	168	170	Right-handed 310
Helix 72	AH9	H	171	176	Right-handed alpha
Helix 73	AI1	H	179	195	Right-handed alpha
Helix 74	AI2	E	8	21	Right-handed alpha
Helix 75	AI3	E	24	37	Right-handed alpha
Helix 76	AI4	E	45	59	Right-handed alpha
Helix 77	AI5	E	72	83	Right-handed alpha
Helix 78	AI6	E	94	108	Right-handed alpha
Helix 79	AI7	E	110	112	Right-handed 310
Helix 80	AI8	E	120	125	Right-handed alpha
Helix 81	AI9	E	126	128	Right-handed 310
Helix 82	AJ1	E	141	143	Right-handed 310
Helix 83	AJ2	E	144	155	Right-handed alpha
Helix 84	AJ3	E	168	172	Right-handed 310
Helix 85	AJ4	E	179	195	Right-handed alpha
Helix 86	AJ5	F	8	21	Right-handed alpha
Helix 87	AJ6	F	24	37	Right-handed alpha
Helix 88	AJ7	F	45	59	Right-handed alpha
Helix 89	AJ8	F	72	83	Right-handed alpha
Helix 90	AJ9	F	94	108	Right-handed alpha
Helix 91	AK1	F	110	112	Right-handed 310
Helix 92	AK2	F	120	125	Right-handed alpha
Helix 93	AK3	F	126	128	Right-handed 310
Helix 94	AK4	F	141	143	Right-handed 310
Helix 95	AK5	F	144	155	Right-handed alpha
Helix 96	AK6	F	168	175	Right-handed 310
Helix 97	AK7	F	179	195	Right-handed alpha

There are 5 sheets in PDB entry 6JCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	87	92	parallel
Strand 3	A	63	67	parallel
Strand 4	A	133	138	parallel
Strand 5	A	156	165	parallel
Strand 6	A	212	219	anti-parallel
Strand 7	A	198	206	anti-parallel
Strand 8	B	198	205	anti-parallel
Strand 9	B	212	219	anti-parallel
Strand 10	B	156	165	anti-parallel
Strand 11	B	133	138	parallel
Strand 12	B	63	67	parallel
Strand 13	B	87	92	parallel
Strand 14	B	114	118	parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	87	92	parallel
Strand 3	C	63	67	parallel
Strand 4	C	133	138	parallel
Strand 5	C	156	165	parallel
Strand 6	C	212	219	anti-parallel
Strand 7	C	198	205	anti-parallel
Strand 8	D	198	206	anti-parallel
Strand 9	D	212	219	anti-parallel
Strand 10	D	156	165	anti-parallel
Strand 11	D	133	138	parallel
Strand 12	D	63	67	parallel
Strand 13	D	87	92	parallel
Strand 14	D	114	118	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	114	118	first strand
Strand 2	G	87	92	parallel
Strand 3	G	63	67	parallel
Strand 4	G	133	138	parallel
Strand 5	G	156	165	parallel
Strand 6	G	212	219	anti-parallel
Strand 7	G	198	205	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	87	92	parallel
Strand 3	H	63	67	parallel
Strand 4	H	133	138	parallel
Strand 5	H	156	165	parallel
Strand 6	H	212	219	anti-parallel
Strand 7	H	198	205	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	87	92	parallel
Strand 3	E	63	67	parallel
Strand 4	E	133	138	parallel
Strand 5	E	156	165	parallel
Strand 6	E	212	219	anti-parallel
Strand 7	E	198	206	anti-parallel
Strand 8	F	198	205	anti-parallel
Strand 9	F	212	219	anti-parallel
Strand 10	F	156	165	anti-parallel
Strand 11	F	133	138	parallel
Strand 12	F	63	67	parallel
Strand 13	F	87	92	parallel
Strand 14	F	114	118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCL