Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCM entry

There are 4 chains in PDB entry 6JCM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 6	ARG 220
B	GLN 6	ARG 220
C	GLN 6	ARG 220
D	GLN 6	ARG 220

There are 52 helices in PDB entry 6JCM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	24	37	Right-handed alpha
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	69	71	Right-handed 310
Helix 5	AA5	A	72	83	Right-handed alpha
Helix 6	AA6	A	94	108	Right-handed alpha
Helix 7	AA7	A	110	112	Right-handed 310
Helix 8	AA8	A	120	125	Right-handed alpha
Helix 9	AA9	A	126	128	Right-handed 310
Helix 10	AB1	A	141	143	Right-handed 310
Helix 11	AB2	A	144	155	Right-handed alpha
Helix 12	AB3	A	168	172	Right-handed 310
Helix 13	AB4	A	179	195	Right-handed alpha
Helix 14	AB5	B	8	21	Right-handed alpha
Helix 15	AB6	B	24	37	Right-handed alpha
Helix 16	AB7	B	45	59	Right-handed alpha
Helix 17	AB8	B	69	71	Right-handed 310
Helix 18	AB9	B	72	83	Right-handed alpha
Helix 19	AC1	B	94	108	Right-handed alpha
Helix 20	AC2	B	110	112	Right-handed 310
Helix 21	AC3	B	120	125	Right-handed alpha
Helix 22	AC4	B	126	128	Right-handed 310
Helix 23	AC5	B	141	143	Right-handed 310
Helix 24	AC6	B	144	155	Right-handed alpha
Helix 25	AC7	B	168	172	Right-handed 310
Helix 26	AC8	B	179	195	Right-handed alpha
Helix 27	AC9	C	8	21	Right-handed alpha
Helix 28	AD1	C	24	37	Right-handed alpha
Helix 29	AD2	C	45	59	Right-handed alpha
Helix 30	AD3	C	69	71	Right-handed 310
Helix 31	AD4	C	72	83	Right-handed alpha
Helix 32	AD5	C	94	108	Right-handed alpha
Helix 33	AD6	C	110	112	Right-handed 310
Helix 34	AD7	C	120	125	Right-handed alpha
Helix 35	AD8	C	126	128	Right-handed 310
Helix 36	AD9	C	141	143	Right-handed 310
Helix 37	AE1	C	144	155	Right-handed alpha
Helix 38	AE2	C	168	172	Right-handed 310
Helix 39	AE3	C	179	195	Right-handed alpha
Helix 40	AE4	D	8	21	Right-handed alpha
Helix 41	AE5	D	24	37	Right-handed alpha
Helix 42	AE6	D	45	59	Right-handed alpha
Helix 43	AE7	D	69	71	Right-handed 310
Helix 44	AE8	D	72	83	Right-handed alpha
Helix 45	AE9	D	94	108	Right-handed alpha
Helix 46	AF1	D	110	112	Right-handed 310
Helix 47	AF2	D	120	125	Right-handed alpha
Helix 48	AF3	D	126	128	Right-handed 310
Helix 49	AF4	D	141	143	Right-handed 310
Helix 50	AF5	D	144	155	Right-handed alpha
Helix 51	AF6	D	168	172	Right-handed 310
Helix 52	AF7	D	179	195	Right-handed alpha

There are 4 sheets in PDB entry 6JCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	87	92	parallel
Strand 3	A	63	67	parallel
Strand 4	A	133	138	parallel
Strand 5	A	156	165	parallel
Strand 6	A	212	219	anti-parallel
Strand 7	A	198	205	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	87	92	parallel
Strand 3	B	63	67	parallel
Strand 4	B	133	138	parallel
Strand 5	B	156	165	parallel
Strand 6	B	212	219	anti-parallel
Strand 7	B	198	205	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	87	92	parallel
Strand 3	C	63	67	parallel
Strand 4	C	133	138	parallel
Strand 5	C	156	165	parallel
Strand 6	C	212	219	anti-parallel
Strand 7	C	198	205	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	87	92	parallel
Strand 3	D	63	67	parallel
Strand 4	D	133	138	parallel
Strand 5	D	156	165	parallel
Strand 6	D	212	219	anti-parallel
Strand 7	D	198	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCM