Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JCN entry

There are 2 chains in PDB entry 6JCN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 151LYS 370
B
 LYS 151LYS 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6JCN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 189Right-handed alpha
Helix 2
AA2
A
201 206Right-handed alpha
Helix 3
AA3
A
206 223Right-handed alpha
Helix 4
AA4
A
235 238Right-handed 310
Helix 5
AA5
A
274 277Right-handed 310
Helix 6
AA6
A
278 295Right-handed alpha
Helix 7
AA7
A
299 303Right-handed 310
Helix 8
AA8
A
304 316Right-handed alpha
Helix 9
AA9
A
355 368Right-handed alpha
Helix 10
AB1
B
170 189Right-handed alpha
Helix 11
AB2
B
206 223Right-handed alpha
Helix 12
AB3
B
274 277Right-handed 310
Helix 13
AB4
B
278 295Right-handed alpha
Helix 14
AB5
B
299 303Right-handed 310
Helix 15
AB6
B
304 316Right-handed alpha
Helix 16
AB7
B
355 368Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6JCN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
268 273parallel
Strand 4
A
193 197parallel
Strand 5
A
155 159parallel
Strand 6
A
322 325parallel
Strand 7
A
344 346parallel
Strand 8
B
330 331anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 242first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
268 273parallel
Strand 4
B
193 197parallel
Strand 5
B
155 159parallel
Strand 6
B
322 325parallel
Strand 7
B
344 346parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il