Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCO entry

There are 2 chains in PDB entry 6JCO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ALA 755
B	HIS 29	ALA 755

There are 55 helices in PDB entry 6JCO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	94	112	Right-handed alpha
Helix 3	AA3	A	127	132	Right-handed alpha
Helix 4	AA4	A	179	183	Right-handed 310
Helix 5	AA5	A	206	224	Right-handed alpha
Helix 6	AA6	A	240	248	Right-handed alpha
Helix 7	AA7	A	295	299	Right-handed 310
Helix 8	AA8	A	310	312	Right-handed 310
Helix 9	AA9	A	324	330	Right-handed alpha
Helix 10	AB1	A	330	342	Right-handed alpha
Helix 11	AB2	A	359	364	Right-handed alpha
Helix 12	AB3	A	384	388	Right-handed 310
Helix 13	AB4	A	396	401	Right-handed alpha
Helix 14	AB5	A	403	411	Right-handed alpha
Helix 15	AB6	A	434	438	Right-handed 310
Helix 16	AB7	A	472	490	Right-handed alpha
Helix 17	AB8	A	507	511	Right-handed 310
Helix 18	AB9	A	584	598	Right-handed alpha
Helix 19	AC1	A	630	632	Right-handed 310
Helix 20	AC2	A	633	638	Right-handed alpha
Helix 21	AC3	A	662	666	Right-handed 310
Helix 22	AC4	A	689	695	Right-handed alpha
Helix 23	AC5	A	695	706	Right-handed alpha
Helix 24	AC6	A	726	731	Right-handed alpha
Helix 25	AC7	A	737	743	Right-handed 310
Helix 26	AC8	A	744	751	Right-handed alpha
Helix 27	AC9	B	29	35	Right-handed 310
Helix 28	AD1	B	55	59	Right-handed 310
Helix 29	AD2	B	94	112	Right-handed alpha
Helix 30	AD3	B	127	132	Right-handed alpha
Helix 31	AD4	B	179	183	Right-handed 310
Helix 32	AD5	B	206	224	Right-handed alpha
Helix 33	AD6	B	240	248	Right-handed alpha
Helix 34	AD7	B	297	299	Right-handed 310
Helix 35	AD8	B	310	312	Right-handed 310
Helix 36	AD9	B	324	329	Right-handed alpha
Helix 37	AE1	B	330	342	Right-handed alpha
Helix 38	AE2	B	359	364	Right-handed alpha
Helix 39	AE3	B	384	388	Right-handed 310
Helix 40	AE4	B	399	402	Right-handed 310
Helix 41	AE5	B	403	411	Right-handed alpha
Helix 42	AE6	B	434	438	Right-handed 310
Helix 43	AE7	B	472	490	Right-handed alpha
Helix 44	AE8	B	505	510	Right-handed alpha
Helix 45	AE9	B	557	561	Right-handed 310
Helix 46	AF1	B	584	598	Right-handed alpha
Helix 47	AF2	B	611	617	Right-handed alpha
Helix 48	AF3	B	630	632	Right-handed 310
Helix 49	AF4	B	633	638	Right-handed alpha
Helix 50	AF5	B	662	666	Right-handed 310
Helix 51	AF6	B	689	694	Right-handed alpha
Helix 52	AF7	B	695	706	Right-handed alpha
Helix 53	AF8	B	726	731	Right-handed alpha
Helix 54	AF9	B	739	743	Right-handed 310
Helix 55	AG1	B	744	753	Right-handed alpha

There are 9 sheets in PDB entry 6JCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	40	46	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	81	89	anti-parallel
Strand 5	A	117	122	parallel
Strand 6	A	349	354	anti-parallel
Strand 7	A	314	319	parallel
Strand 8	A	304	309	anti-parallel
Strand 9	A	272	277	anti-parallel
Strand 10	A	284	289	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	138	141	parallel
Strand 3	A	172	176	parallel
Strand 4	A	161	166	anti-parallel
Strand 5	A	188	193	anti-parallel
Strand 6	A	196	201	anti-parallel
Strand 7	A	230	235	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	432	first strand
Strand 2	A	420	426	anti-parallel
Strand 3	A	446	455	anti-parallel
Strand 4	A	458	467	anti-parallel
Strand 5	A	495	500	parallel
Strand 6	A	717	721	anti-parallel
Strand 7	A	680	684	parallel
Strand 8	A	671	675	anti-parallel
Strand 9	A	641	646	anti-parallel
Strand 10	A	653	656	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	517	520	parallel
Strand 3	A	549	554	parallel
Strand 4	A	537	543	anti-parallel
Strand 5	A	566	570	anti-parallel
Strand 6	A	575	579	anti-parallel
Strand 7	A	604	606	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	67	75	anti-parallel
Strand 4	B	81	89	anti-parallel
Strand 5	B	117	122	parallel
Strand 6	B	349	354	anti-parallel
Strand 7	B	314	319	parallel
Strand 8	B	304	309	anti-parallel
Strand 9	B	272	277	anti-parallel
Strand 10	B	284	289	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	138	141	parallel
Strand 3	B	172	175	parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	188	192	anti-parallel
Strand 6	B	196	201	anti-parallel
Strand 7	B	230	235	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	366	367	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	420	426	anti-parallel
Strand 3	B	446	455	anti-parallel
Strand 4	B	458	467	anti-parallel
Strand 5	B	495	500	parallel
Strand 6	B	717	721	anti-parallel
Strand 7	B	680	684	parallel
Strand 8	B	671	675	anti-parallel
Strand 9	B	641	646	anti-parallel
Strand 10	B	653	656	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	517	520	parallel
Strand 3	B	549	554	parallel
Strand 4	B	537	543	anti-parallel
Strand 5	B	566	570	anti-parallel
Strand 6	B	575	579	anti-parallel
Strand 7	B	604	606	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCO