Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCV entry

There are 12 chains in PDB entry 6JCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ARG 328
B	LYS 3	ARG 328
C	LYS 3	ARG 328
D	LYS 3	ARG 328
E	LYS 3	ARG 328
F	LYS 3	ARG 328
G	LYS 3	ARG 328
H	LYS 3	ARG 328
I	LYS 3	ARG 328
J	LYS 3	ARG 328
K	LYS 3	ARG 328
L	LYS 3	ARG 328

There are225 helices in PDB entry 6JCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	37	Right-handed alpha
Helix 2	AA2	A	48	57	Right-handed alpha
Helix 3	AA3	A	63	68	Right-handed alpha
Helix 4	AA4	A	82	90	Right-handed alpha
Helix 5	AA5	A	94	98	Right-handed 310
Helix 6	AA6	A	108	113	Right-handed alpha
Helix 7	AA7	A	135	143	Right-handed alpha
Helix 8	AA8	A	159	165	Right-handed alpha
Helix 9	AA9	A	165	171	Right-handed alpha
Helix 10	AB1	A	183	197	Right-handed alpha
Helix 11	AB2	A	197	214	Right-handed alpha
Helix 12	AB3	A	220	229	Right-handed alpha
Helix 13	AB4	A	233	240	Right-handed alpha
Helix 14	AB5	A	249	253	Right-handed 310
Helix 15	AB6	A	254	266	Right-handed alpha
Helix 16	AB7	A	268	285	Right-handed alpha
Helix 17	AB8	A	286	299	Right-handed alpha
Helix 18	AB9	A	301	312	Right-handed alpha
Helix 19	AC1	A	313	324	Right-handed alpha
Helix 20	AC2	B	26	37	Right-handed alpha
Helix 21	AC3	B	48	57	Right-handed alpha
Helix 22	AC4	B	63	68	Right-handed alpha
Helix 23	AC5	B	82	90	Right-handed alpha
Helix 24	AC6	B	94	98	Right-handed 310
Helix 25	AC7	B	108	113	Right-handed alpha
Helix 26	AC8	B	135	143	Right-handed alpha
Helix 27	AC9	B	159	165	Right-handed alpha
Helix 28	AD1	B	165	171	Right-handed alpha
Helix 29	AD2	B	183	197	Right-handed alpha
Helix 30	AD3	B	197	214	Right-handed alpha
Helix 31	AD4	B	220	229	Right-handed alpha
Helix 32	AD5	B	233	240	Right-handed alpha
Helix 33	AD6	B	249	253	Right-handed 310
Helix 34	AD7	B	254	266	Right-handed alpha
Helix 35	AD8	B	268	285	Right-handed alpha
Helix 36	AD9	B	286	299	Right-handed alpha
Helix 37	AE1	B	301	312	Right-handed alpha
Helix 38	AE2	B	313	324	Right-handed alpha
Helix 39	AE3	C	26	37	Right-handed alpha
Helix 40	AE4	C	48	57	Right-handed alpha
Helix 41	AE5	C	63	68	Right-handed alpha
Helix 42	AE6	C	82	90	Right-handed alpha
Helix 43	AE7	C	94	98	Right-handed 310
Helix 44	AE8	C	108	113	Right-handed alpha
Helix 45	AE9	C	135	143	Right-handed alpha
Helix 46	AF1	C	159	165	Right-handed alpha
Helix 47	AF2	C	165	171	Right-handed alpha
Helix 48	AF3	C	183	197	Right-handed alpha
Helix 49	AF4	C	197	214	Right-handed alpha
Helix 50	AF5	C	220	229	Right-handed alpha
Helix 51	AF6	C	233	240	Right-handed alpha
Helix 52	AF7	C	249	253	Right-handed 310
Helix 53	AF8	C	254	266	Right-handed alpha
Helix 54	AF9	C	268	285	Right-handed alpha
Helix 55	AG1	C	286	299	Right-handed alpha
Helix 56	AG2	C	301	312	Right-handed alpha
Helix 57	AG3	C	313	324	Right-handed alpha
Helix 58	AG4	D	26	37	Right-handed alpha
Helix 59	AG5	D	48	57	Right-handed alpha
Helix 60	AG6	D	63	68	Right-handed alpha
Helix 61	AG7	D	82	90	Right-handed alpha
Helix 62	AG8	D	94	98	Right-handed 310
Helix 63	AG9	D	108	113	Right-handed alpha
Helix 64	AH1	D	135	143	Right-handed alpha
Helix 65	AH2	D	159	171	Right-handed alpha
Helix 66	AH3	D	183	197	Right-handed alpha
Helix 67	AH4	D	197	214	Right-handed alpha
Helix 68	AH5	D	220	229	Right-handed alpha
Helix 69	AH6	D	233	240	Right-handed alpha
Helix 70	AH7	D	249	253	Right-handed 310
Helix 71	AH8	D	254	266	Right-handed alpha
Helix 72	AH9	D	268	285	Right-handed alpha
Helix 73	AI1	D	286	299	Right-handed alpha
Helix 74	AI2	D	301	312	Right-handed alpha
Helix 75	AI3	D	313	324	Right-handed alpha
Helix 76	AI4	E	26	37	Right-handed alpha
Helix 77	AI5	E	48	57	Right-handed alpha
Helix 78	AI6	E	63	68	Right-handed alpha
Helix 79	AI7	E	82	90	Right-handed alpha
Helix 80	AI8	E	94	98	Right-handed 310
Helix 81	AI9	E	108	113	Right-handed alpha
Helix 82	AJ1	E	135	143	Right-handed alpha
Helix 83	AJ2	E	159	165	Right-handed alpha
Helix 84	AJ3	E	165	171	Right-handed alpha
Helix 85	AJ4	E	183	197	Right-handed alpha
Helix 86	AJ5	E	197	214	Right-handed alpha
Helix 87	AJ6	E	220	229	Right-handed alpha
Helix 88	AJ7	E	233	240	Right-handed alpha
Helix 89	AJ8	E	249	253	Right-handed 310
Helix 90	AJ9	E	254	266	Right-handed alpha
Helix 91	AK1	E	268	285	Right-handed alpha
Helix 92	AK2	E	286	299	Right-handed alpha
Helix 93	AK3	E	301	312	Right-handed alpha
Helix 94	AK4	E	313	324	Right-handed alpha
Helix 95	AK5	F	26	37	Right-handed alpha
Helix 96	AK6	F	48	57	Right-handed alpha
Helix 97	AK7	F	63	68	Right-handed alpha
Helix 98	AK8	F	82	90	Right-handed alpha
Helix 99	AK9	F	94	98	Right-handed 310
Helix 100	AL1	F	108	113	Right-handed alpha
Helix 101	AL2	F	135	143	Right-handed alpha
Helix 102	AL3	F	159	165	Right-handed alpha
Helix 103	AL4	F	165	171	Right-handed alpha
Helix 104	AL5	F	183	197	Right-handed alpha
Helix 105	AL6	F	197	214	Right-handed alpha
Helix 106	AL7	F	220	229	Right-handed alpha
Helix 107	AL8	F	233	240	Right-handed alpha
Helix 108	AL9	F	249	253	Right-handed 310
Helix 109	AM1	F	254	266	Right-handed alpha
Helix 110	AM2	F	268	285	Right-handed alpha
Helix 111	AM3	F	286	299	Right-handed alpha
Helix 112	AM4	F	301	312	Right-handed alpha
Helix 113	AM5	F	313	324	Right-handed alpha
Helix 114	AM6	G	26	37	Right-handed alpha
Helix 115	AM7	G	48	57	Right-handed alpha
Helix 116	AM8	G	63	68	Right-handed alpha
Helix 117	AM9	G	82	90	Right-handed alpha
Helix 118	AN1	G	94	98	Right-handed 310
Helix 119	AN2	G	108	113	Right-handed alpha
Helix 120	AN3	G	135	143	Right-handed alpha
Helix 121	AN4	G	159	165	Right-handed alpha
Helix 122	AN5	G	165	171	Right-handed alpha
Helix 123	AN6	G	183	197	Right-handed alpha
Helix 124	AN7	G	197	214	Right-handed alpha
Helix 125	AN8	G	220	229	Right-handed alpha
Helix 126	AN9	G	233	240	Right-handed alpha
Helix 127	AO1	G	249	253	Right-handed 310
Helix 128	AO2	G	254	266	Right-handed alpha
Helix 129	AO3	G	268	285	Right-handed alpha
Helix 130	AO4	G	286	299	Right-handed alpha
Helix 131	AO5	G	301	312	Right-handed alpha
Helix 132	AO6	G	313	324	Right-handed alpha
Helix 133	AO7	H	26	37	Right-handed alpha
Helix 134	AO8	H	48	57	Right-handed alpha
Helix 135	AO9	H	63	68	Right-handed alpha
Helix 136	AP1	H	82	90	Right-handed alpha
Helix 137	AP2	H	94	98	Right-handed 310
Helix 138	AP3	H	108	113	Right-handed alpha
Helix 139	AP4	H	135	143	Right-handed alpha
Helix 140	AP5	H	159	171	Right-handed alpha
Helix 141	AP6	H	183	197	Right-handed alpha
Helix 142	AP7	H	197	214	Right-handed alpha
Helix 143	AP8	H	220	229	Right-handed alpha
Helix 144	AP9	H	233	240	Right-handed alpha
Helix 145	AQ1	H	249	253	Right-handed 310
Helix 146	AQ2	H	254	266	Right-handed alpha
Helix 147	AQ3	H	268	285	Right-handed alpha
Helix 148	AQ4	H	286	299	Right-handed alpha
Helix 149	AQ5	H	301	312	Right-handed alpha
Helix 150	AQ6	H	313	324	Right-handed alpha
Helix 151	AQ7	I	26	37	Right-handed alpha
Helix 152	AQ8	I	48	57	Right-handed alpha
Helix 153	AQ9	I	63	68	Right-handed alpha
Helix 154	AR1	I	82	90	Right-handed alpha
Helix 155	AR2	I	94	98	Right-handed 310
Helix 156	AR3	I	108	113	Right-handed alpha
Helix 157	AR4	I	135	143	Right-handed alpha
Helix 158	AR5	I	159	171	Right-handed alpha
Helix 159	AR6	I	183	197	Right-handed alpha
Helix 160	AR7	I	197	214	Right-handed alpha
Helix 161	AR8	I	220	229	Right-handed alpha
Helix 162	AR9	I	233	240	Right-handed alpha
Helix 163	AS1	I	249	253	Right-handed 310
Helix 164	AS2	I	254	266	Right-handed alpha
Helix 165	AS3	I	268	285	Right-handed alpha
Helix 166	AS4	I	286	299	Right-handed alpha
Helix 167	AS5	I	301	312	Right-handed alpha
Helix 168	AS6	I	313	324	Right-handed alpha
Helix 169	AS7	J	26	37	Right-handed alpha
Helix 170	AS8	J	48	57	Right-handed alpha
Helix 171	AS9	J	63	68	Right-handed alpha
Helix 172	AT1	J	82	90	Right-handed alpha
Helix 173	AT2	J	94	98	Right-handed 310
Helix 174	AT3	J	108	113	Right-handed alpha
Helix 175	AT4	J	135	143	Right-handed alpha
Helix 176	AT5	J	159	165	Right-handed alpha
Helix 177	AT6	J	165	171	Right-handed alpha
Helix 178	AT7	J	183	197	Right-handed alpha
Helix 179	AT8	J	197	214	Right-handed alpha
Helix 180	AT9	J	220	229	Right-handed alpha
Helix 181	AU1	J	233	240	Right-handed alpha
Helix 182	AU2	J	249	253	Right-handed 310
Helix 183	AU3	J	254	266	Right-handed alpha
Helix 184	AU4	J	268	285	Right-handed alpha
Helix 185	AU5	J	286	299	Right-handed alpha
Helix 186	AU6	J	301	312	Right-handed alpha
Helix 187	AU7	J	313	324	Right-handed alpha
Helix 188	AU8	K	26	37	Right-handed alpha
Helix 189	AU9	K	48	57	Right-handed alpha
Helix 190	AV1	K	63	68	Right-handed alpha
Helix 191	AV2	K	82	90	Right-handed alpha
Helix 192	AV3	K	94	98	Right-handed 310
Helix 193	AV4	K	108	113	Right-handed alpha
Helix 194	AV5	K	135	143	Right-handed alpha
Helix 195	AV6	K	159	165	Right-handed alpha
Helix 196	AV7	K	165	171	Right-handed alpha
Helix 197	AV8	K	183	197	Right-handed alpha
Helix 198	AV9	K	197	214	Right-handed alpha
Helix 199	AW1	K	220	229	Right-handed alpha
Helix 200	AW2	K	233	240	Right-handed alpha
Helix 201	AW3	K	249	253	Right-handed 310
Helix 202	AW4	K	254	266	Right-handed alpha
Helix 203	AW5	K	268	285	Right-handed alpha
Helix 204	AW6	K	286	299	Right-handed alpha
Helix 205	AW7	K	301	312	Right-handed alpha
Helix 206	AW8	K	313	324	Right-handed alpha
Helix 207	AW9	L	26	37	Right-handed alpha
Helix 208	AX1	L	48	57	Right-handed alpha
Helix 209	AX2	L	63	68	Right-handed alpha
Helix 210	AX3	L	82	90	Right-handed alpha
Helix 211	AX4	L	94	98	Right-handed 310
Helix 212	AX5	L	108	113	Right-handed alpha
Helix 213	AX6	L	135	143	Right-handed alpha
Helix 214	AX7	L	159	165	Right-handed alpha
Helix 215	AX8	L	165	171	Right-handed alpha
Helix 216	AX9	L	183	197	Right-handed alpha
Helix 217	AY1	L	197	214	Right-handed alpha
Helix 218	AY2	L	220	229	Right-handed alpha
Helix 219	AY3	L	233	240	Right-handed alpha
Helix 220	AY4	L	249	253	Right-handed 310
Helix 221	AY5	L	254	266	Right-handed alpha
Helix 222	AY6	L	268	285	Right-handed alpha
Helix 223	AY7	L	286	299	Right-handed alpha
Helix 224	AY8	L	301	312	Right-handed alpha
Helix 225	AY9	L	313	324	Right-handed alpha

There are 12 sheets in PDB entry 6JCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	40	44	parallel
Strand 3	A	17	21	parallel
Strand 4	A	73	76	parallel
Strand 5	A	101	105	parallel
Strand 6	A	122	129	parallel
Strand 7	A	148	152	anti-parallel
Strand 8	A	179	182	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	40	44	parallel
Strand 3	B	17	21	parallel
Strand 4	B	73	76	parallel
Strand 5	B	101	105	parallel
Strand 6	B	122	129	parallel
Strand 7	B	148	152	anti-parallel
Strand 8	B	179	182	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	40	44	parallel
Strand 3	C	17	21	parallel
Strand 4	C	73	76	parallel
Strand 5	C	101	105	parallel
Strand 6	C	122	129	parallel
Strand 7	C	148	152	anti-parallel
Strand 8	C	179	182	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	40	44	parallel
Strand 3	D	17	21	parallel
Strand 4	D	73	76	parallel
Strand 5	D	101	105	parallel
Strand 6	D	122	129	parallel
Strand 7	D	148	152	anti-parallel
Strand 8	D	179	182	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	40	44	parallel
Strand 3	E	17	21	parallel
Strand 4	E	73	76	parallel
Strand 5	E	101	105	parallel
Strand 6	E	122	129	parallel
Strand 7	E	148	152	anti-parallel
Strand 8	E	179	182	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	F	40	44	parallel
Strand 3	F	17	21	parallel
Strand 4	F	73	76	parallel
Strand 5	F	101	105	parallel
Strand 6	F	122	129	parallel
Strand 7	F	148	152	anti-parallel
Strand 8	F	179	182	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	40	44	parallel
Strand 3	G	17	21	parallel
Strand 4	G	73	76	parallel
Strand 5	G	101	105	parallel
Strand 6	G	122	129	parallel
Strand 7	G	148	152	anti-parallel
Strand 8	G	179	182	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	62	first strand
Strand 2	H	40	44	parallel
Strand 3	H	17	21	parallel
Strand 4	H	73	76	parallel
Strand 5	H	101	105	parallel
Strand 6	H	122	129	parallel
Strand 7	H	148	152	anti-parallel
Strand 8	H	179	182	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	62	first strand
Strand 2	I	40	44	parallel
Strand 3	I	17	21	parallel
Strand 4	I	73	76	parallel
Strand 5	I	101	105	parallel
Strand 6	I	122	129	parallel
Strand 7	I	148	152	anti-parallel
Strand 8	I	179	182	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	62	first strand
Strand 2	J	40	44	parallel
Strand 3	J	17	21	parallel
Strand 4	J	73	76	parallel
Strand 5	J	101	105	parallel
Strand 6	J	122	129	parallel
Strand 7	J	148	152	anti-parallel
Strand 8	J	179	182	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	62	first strand
Strand 2	K	40	44	parallel
Strand 3	K	17	21	parallel
Strand 4	K	73	76	parallel
Strand 5	K	101	105	parallel
Strand 6	K	122	129	parallel
Strand 7	K	148	152	anti-parallel
Strand 8	K	179	182	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	40	44	parallel
Strand 3	L	17	21	parallel
Strand 4	L	73	76	parallel
Strand 5	L	101	105	parallel
Strand 6	L	122	129	parallel
Strand 7	L	148	152	anti-parallel
Strand 8	L	179	182	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCV