Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JCY entry

There are 9 chains in PDB entry 6JCY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	ARG 223
B	MET 1	GLY 235
C	ARG 23	ASN 1161
D	LEU 2	ALA 1281
E	GLY 26	GLU 107
F	ASP 22	LEU 185
G	T 3	A 25
H	T 3	T 22
I	C 2	A 7

There are116 helices in PDB entry 6JCY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	203	220	Right-handed alpha
Helix 4	AA4	B	29	46	Right-handed alpha
Helix 5	AA5	B	72	82	Right-handed alpha
Helix 6	AA6	B	203	224	Right-handed alpha
Helix 7	AA7	C	54	66	Right-handed alpha
Helix 8	AA8	C	67	77	Right-handed alpha
Helix 9	AA9	C	84	94	Right-handed alpha
Helix 10	AB1	C	118	125	Right-handed alpha
Helix 11	AB2	C	193	196	Right-handed 310
Helix 12	AB3	C	234	241	Right-handed alpha
Helix 13	AB4	C	244	252	Right-handed alpha
Helix 14	AB5	C	256	264	Right-handed alpha
Helix 15	AB6	C	268	281	Right-handed alpha
Helix 16	AB7	C	289	301	Right-handed alpha
Helix 17	AB8	C	309	320	Right-handed alpha
Helix 18	AB9	C	334	350	Right-handed alpha
Helix 19	AC1	C	380	407	Right-handed alpha
Helix 20	AC2	C	413	418	Right-handed alpha
Helix 21	AC3	C	420	434	Right-handed alpha
Helix 22	AC4	C	444	453	Right-handed alpha
Helix 23	AC5	C	464	468	Right-handed 310
Helix 24	AC6	C	469	474	Right-handed alpha
Helix 25	AC7	C	476	480	Right-handed 310
Helix 26	AC8	C	533	537	Right-handed alpha
Helix 27	AC9	C	574	576	Right-handed 310
Helix 28	AD1	C	582	587	Right-handed 310
Helix 29	AD2	C	590	594	Right-handed 310
Helix 30	AD3	C	596	600	Right-handed 310
Helix 31	AD4	C	601	613	Right-handed alpha
Helix 32	AD5	C	629	639	Right-handed alpha
Helix 33	AD6	C	739	744	Right-handed alpha
Helix 34	AD7	C	815	826	Right-handed alpha
Helix 35	AD8	C	920	925	Right-handed alpha
Helix 36	AD9	C	928	943	Right-handed alpha
Helix 37	AE1	C	960	963	Right-handed 310
Helix 38	AE2	C	981	989	Right-handed alpha
Helix 39	AE3	C	1036	1041	Right-handed alpha
Helix 40	AE4	C	1069	1080	Right-handed alpha
Helix 41	AE5	C	1081	1090	Right-handed alpha
Helix 42	AE6	C	1095	1108	Right-handed alpha
Helix 43	AE7	C	1118	1131	Right-handed alpha
Helix 44	AE8	C	1151	1161	Right-handed alpha
Helix 45	AE9	D	16	24	Right-handed alpha
Helix 46	AF1	D	67	71	Right-handed 310
Helix 47	AF2	D	84	90	Right-handed 310
Helix 48	AF3	D	103	108	Right-handed alpha
Helix 49	AF4	D	112	118	Right-handed alpha
Helix 50	AF5	D	121	130	Right-handed alpha
Helix 51	AF6	D	140	146	Right-handed alpha
Helix 52	AF7	D	147	187	Right-handed alpha
Helix 53	AF8	D	190	228	Right-handed alpha
Helix 54	AF9	D	237	247	Right-handed alpha
Helix 55	AG1	D	248	250	Right-handed 310
Helix 56	AG2	D	256	267	Right-handed alpha
Helix 57	AG3	D	269	283	Right-handed alpha
Helix 58	AG4	D	286	306	Right-handed alpha
Helix 59	AG5	D	308	311	Right-handed 310
Helix 60	AG6	D	321	325	Right-handed 310
Helix 61	AG7	D	338	360	Right-handed alpha
Helix 62	AG8	D	363	384	Right-handed alpha
Helix 63	AG9	D	393	397	Right-handed 310
Helix 64	AH1	D	411	417	Right-handed alpha
Helix 65	AH2	D	445	452	Right-handed alpha
Helix 66	AH3	D	452	463	Right-handed alpha
Helix 67	AH4	D	468	478	Right-handed alpha
Helix 68	AH5	D	482	492	Right-handed alpha
Helix 69	AH6	D	505	507	Right-handed 310
Helix 70	AH7	D	528	533	Right-handed alpha
Helix 71	AH8	D	548	558	Right-handed alpha
Helix 72	AH9	D	560	564	Right-handed 310
Helix 73	AI1	D	578	590	Right-handed alpha
Helix 74	AI2	D	614	624	Right-handed alpha
Helix 75	AI3	D	643	651	Right-handed alpha
Helix 76	AI4	D	668	677	Right-handed alpha
Helix 77	AI5	D	689	704	Right-handed alpha
Helix 78	AI6	D	705	726	Right-handed alpha
Helix 79	AI7	D	741	762	Right-handed alpha
Helix 80	AI8	D	766	793	Right-handed alpha
Helix 81	AI9	D	797	805	Right-handed alpha
Helix 82	AJ1	D	810	819	Right-handed alpha
Helix 83	AJ2	D	845	882	Right-handed alpha
Helix 84	AJ3	D	914	918	Right-handed 310
Helix 85	AJ4	D	945	955	Right-handed alpha
Helix 86	AJ5	D	976	980	Right-handed alpha
Helix 87	AJ6	D	994	1005	Right-handed alpha
Helix 88	AJ7	D	1006	1010	Right-handed 310
Helix 89	AJ8	D	1027	1036	Right-handed alpha
Helix 90	AJ9	D	1117	1126	Right-handed alpha
Helix 91	AK1	D	1126	1144	Right-handed alpha
Helix 92	AK2	D	1150	1160	Right-handed alpha
Helix 93	AK3	D	1183	1189	Right-handed alpha
Helix 94	AK4	D	1209	1216	Right-handed alpha
Helix 95	AK5	D	1219	1225	Right-handed alpha
Helix 96	AK6	D	1228	1239	Right-handed alpha
Helix 97	AK7	D	1247	1255	Right-handed alpha
Helix 98	AK8	D	1260	1263	Right-handed 310
Helix 99	AK9	D	1264	1269	Right-handed alpha
Helix 100	AL1	D	1275	1281	Right-handed alpha
Helix 101	AL2	E	32	36	Right-handed 310
Helix 102	AL3	E	38	46	Right-handed alpha
Helix 103	AL4	E	48	70	Right-handed alpha
Helix 104	AL5	E	89	100	Right-handed alpha
Helix 105	AL6	F	23	33	Right-handed alpha
Helix 106	AL7	F	33	49	Right-handed alpha
Helix 107	AL8	F	50	68	Right-handed alpha
Helix 108	AL9	F	69	72	Right-handed 310
Helix 109	AM1	F	77	98	Right-handed alpha
Helix 110	AM2	F	108	112	Right-handed 310
Helix 111	AM3	F	118	127	Right-handed alpha
Helix 112	AM4	F	129	132	Right-handed 310
Helix 113	AM5	F	133	138	Right-handed alpha
Helix 114	AM6	F	140	152	Right-handed alpha
Helix 115	AM7	F	158	164	Right-handed alpha
Helix 116	AM8	F	167	184	Right-handed alpha

There are 43 sheets in PDB entry 6JCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	188	198	anti-parallel
Strand 4	A	171	182	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	144	anti-parallel
Strand 4	A	47	56	anti-parallel
Strand 5	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	134	144	anti-parallel
Strand 4	B	47	56	anti-parallel
Strand 5	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	38	40	anti-parallel
Strand 3	C	972	973	parallel
Strand 4	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	146	148	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	151	158	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel
Strand 3	C	212	216	anti-parallel
Strand 4	C	222	226	anti-parallel
Strand 5	C	232	233	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	532	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	558	562	anti-parallel
Strand 3	C	568	572	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	661	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	749	762	anti-parallel
Strand 3	C	865	877	anti-parallel
Strand 4	C	845	854	anti-parallel
Strand 5	C	795	796	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	806	808	first strand
Strand 2	C	832	834	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1138	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	102	104	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	900	first strand
Strand 2	D	959	963	anti-parallel
Strand 3	D	924	925	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	902	904	first strand
Strand 2	D	910	912	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1081	first strand
Strand 2	D	1061	1068	anti-parallel
Strand 3	D	1051	1056	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	103	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JCY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JCY