Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JD0 entry

There is 1 chain in PDB entry 6JD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1VAL 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6JD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 7Right-handed 310
Helix 2
AA2
A
8 19Right-handed alpha
Helix 3
AA3
A
24 51Right-handed alpha
Helix 4
AA4
A
67 73Right-handed alpha
Helix 5
AA5
A
104 107Right-handed 310
Helix 6
AA6
A
120 139Right-handed alpha
Helix 7
AA7
A
145 153Right-handed alpha
Helix 8
AA8
A
159 163Right-handed 310
Helix 9
AA9
A
165 177Right-handed alpha
Helix 10
AB1
A
197 199Right-handed 310
Helix 11
AB2
A
214 226Right-handed alpha
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
303 307Right-handed 310
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There are 4 sheets in PDB entry 6JD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
294 298parallel
Strand 4
A
277 282anti-parallel
Strand 5
A
259 268anti-parallel
Strand 6
A
101 102anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
294 298parallel
Strand 4
A
277 282anti-parallel
Strand 5
A
259 268anti-parallel
Strand 6
A
228 232anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
207 210parallel
Strand 3
A
312 315anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
201 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il