Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JD1 entry

There are 12 chains in PDB entry 6JD1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASN 332
B	ASP 2	ASN 332
C	LYS 3	ASP 333
D	LYS 3	ASN 332
E	LYS 3	LYS 331
F	ASP 2	LYS 331
G	ASP 2	LYS 331
H	LYS 3	LYS 331
I	LYS 3	VAL 330
J	LYS 3	LYS 331
K	ASP 2	LYS 329
L	LYS 3	VAL 330

There are215 helices in PDB entry 6JD1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	48	54	Right-handed alpha
Helix 3	AA3	A	55	58	Right-handed 310
Helix 4	AA4	A	63	69	Right-handed alpha
Helix 5	AA5	A	82	90	Right-handed alpha
Helix 6	AA6	A	90	96	Right-handed alpha
Helix 7	AA7	A	135	141	Right-handed alpha
Helix 8	AA8	A	159	171	Right-handed alpha
Helix 9	AA9	A	184	194	Right-handed alpha
Helix 10	AB1	A	197	216	Right-handed alpha
Helix 11	AB2	A	220	229	Right-handed alpha
Helix 12	AB3	A	232	245	Right-handed alpha
Helix 13	AB4	A	246	253	Right-handed 310
Helix 14	AB5	A	254	268	Right-handed alpha
Helix 15	AB6	A	269	285	Right-handed alpha
Helix 16	AB7	A	286	296	Right-handed alpha
Helix 17	AB8	A	300	311	Right-handed alpha
Helix 18	AB9	A	313	324	Right-handed alpha
Helix 19	AC1	B	26	36	Right-handed alpha
Helix 20	AC2	B	50	55	Right-handed alpha
Helix 21	AC3	B	64	69	Right-handed alpha
Helix 22	AC4	B	82	90	Right-handed alpha
Helix 23	AC5	B	91	96	Right-handed alpha
Helix 24	AC6	B	135	140	Right-handed alpha
Helix 25	AC7	B	159	171	Right-handed alpha
Helix 26	AC8	B	184	194	Right-handed alpha
Helix 27	AC9	B	197	216	Right-handed alpha
Helix 28	AD1	B	220	229	Right-handed alpha
Helix 29	AD2	B	233	244	Right-handed alpha
Helix 30	AD3	B	246	253	Right-handed 310
Helix 31	AD4	B	254	268	Right-handed alpha
Helix 32	AD5	B	269	285	Right-handed alpha
Helix 33	AD6	B	286	296	Right-handed alpha
Helix 34	AD7	B	297	299	Right-handed 310
Helix 35	AD8	B	300	311	Right-handed alpha
Helix 36	AD9	B	314	324	Right-handed alpha
Helix 37	AE1	C	24	37	Right-handed alpha
Helix 38	AE2	C	48	56	Right-handed alpha
Helix 39	AE3	C	63	69	Right-handed alpha
Helix 40	AE4	C	82	90	Right-handed alpha
Helix 41	AE5	C	90	96	Right-handed alpha
Helix 42	AE6	C	135	140	Right-handed alpha
Helix 43	AE7	C	160	171	Right-handed alpha
Helix 44	AE8	C	184	197	Right-handed alpha
Helix 45	AE9	C	197	218	Right-handed alpha
Helix 46	AF1	C	220	229	Right-handed alpha
Helix 47	AF2	C	233	244	Right-handed alpha
Helix 48	AF3	C	246	253	Right-handed 310
Helix 49	AF4	C	254	268	Right-handed alpha
Helix 50	AF5	C	269	285	Right-handed alpha
Helix 51	AF6	C	286	297	Right-handed alpha
Helix 52	AF7	C	300	311	Right-handed alpha
Helix 53	AF8	C	313	324	Right-handed alpha
Helix 54	AF9	D	24	35	Right-handed alpha
Helix 55	AG1	D	48	57	Right-handed alpha
Helix 56	AG2	D	64	69	Right-handed alpha
Helix 57	AG3	D	82	90	Right-handed alpha
Helix 58	AG4	D	90	96	Right-handed alpha
Helix 59	AG5	D	135	141	Right-handed alpha
Helix 60	AG6	D	159	171	Right-handed alpha
Helix 61	AG7	D	184	194	Right-handed alpha
Helix 62	AG8	D	197	218	Right-handed alpha
Helix 63	AG9	D	220	229	Right-handed alpha
Helix 64	AH1	D	234	244	Right-handed alpha
Helix 65	AH2	D	247	253	Right-handed 310
Helix 66	AH3	D	254	268	Right-handed alpha
Helix 67	AH4	D	269	285	Right-handed alpha
Helix 68	AH5	D	286	296	Right-handed alpha
Helix 69	AH6	D	297	299	Right-handed 310
Helix 70	AH7	D	300	311	Right-handed alpha
Helix 71	AH8	D	313	324	Right-handed alpha
Helix 72	AH9	E	26	35	Right-handed alpha
Helix 73	AI1	E	48	57	Right-handed alpha
Helix 74	AI2	E	82	90	Right-handed alpha
Helix 75	AI3	E	91	96	Right-handed alpha
Helix 76	AI4	E	135	140	Right-handed alpha
Helix 77	AI5	E	160	171	Right-handed alpha
Helix 78	AI6	E	184	194	Right-handed alpha
Helix 79	AI7	E	197	216	Right-handed alpha
Helix 80	AI8	E	220	229	Right-handed alpha
Helix 81	AI9	E	235	245	Right-handed alpha
Helix 82	AJ1	E	246	253	Right-handed 310
Helix 83	AJ2	E	254	268	Right-handed alpha
Helix 84	AJ3	E	269	285	Right-handed alpha
Helix 85	AJ4	E	286	296	Right-handed alpha
Helix 86	AJ5	E	300	311	Right-handed alpha
Helix 87	AJ6	E	313	324	Right-handed alpha
Helix 88	AJ7	F	24	30	Right-handed alpha
Helix 89	AJ8	F	30	37	Right-handed alpha
Helix 90	AJ9	F	48	57	Right-handed alpha
Helix 91	AK1	F	63	69	Right-handed alpha
Helix 92	AK2	F	82	90	Right-handed alpha
Helix 93	AK3	F	90	96	Right-handed alpha
Helix 94	AK4	F	135	140	Right-handed alpha
Helix 95	AK5	F	141	143	Right-handed 310
Helix 96	AK6	F	159	171	Right-handed alpha
Helix 97	AK7	F	184	194	Right-handed alpha
Helix 98	AK8	F	197	218	Right-handed alpha
Helix 99	AK9	F	220	229	Right-handed alpha
Helix 100	AL1	F	234	244	Right-handed alpha
Helix 101	AL2	F	247	253	Right-handed 310
Helix 102	AL3	F	254	268	Right-handed alpha
Helix 103	AL4	F	269	285	Right-handed alpha
Helix 104	AL5	F	286	296	Right-handed alpha
Helix 105	AL6	F	297	299	Right-handed 310
Helix 106	AL7	F	300	311	Right-handed alpha
Helix 107	AL8	F	313	324	Right-handed alpha
Helix 108	AL9	G	26	36	Right-handed alpha
Helix 109	AM1	G	48	55	Right-handed alpha
Helix 110	AM2	G	64	69	Right-handed alpha
Helix 111	AM3	G	82	90	Right-handed alpha
Helix 112	AM4	G	90	96	Right-handed alpha
Helix 113	AM5	G	135	141	Right-handed alpha
Helix 114	AM6	G	160	171	Right-handed alpha
Helix 115	AM7	G	184	194	Right-handed alpha
Helix 116	AM8	G	197	218	Right-handed alpha
Helix 117	AM9	G	220	229	Right-handed alpha
Helix 118	AN1	G	232	244	Right-handed alpha
Helix 119	AN2	G	246	253	Right-handed 310
Helix 120	AN3	G	254	268	Right-handed alpha
Helix 121	AN4	G	269	285	Right-handed alpha
Helix 122	AN5	G	286	296	Right-handed alpha
Helix 123	AN6	G	297	299	Right-handed 310
Helix 124	AN7	G	300	311	Right-handed alpha
Helix 125	AN8	G	313	324	Right-handed alpha
Helix 126	AN9	H	26	36	Right-handed alpha
Helix 127	AO1	H	49	56	Right-handed alpha
Helix 128	AO2	H	63	70	Right-handed alpha
Helix 129	AO3	H	82	90	Right-handed alpha
Helix 130	AO4	H	90	96	Right-handed alpha
Helix 131	AO5	H	135	140	Right-handed alpha
Helix 132	AO6	H	159	171	Right-handed alpha
Helix 133	AO7	H	184	194	Right-handed alpha
Helix 134	AO8	H	197	216	Right-handed alpha
Helix 135	AO9	H	220	229	Right-handed alpha
Helix 136	AP1	H	232	245	Right-handed alpha
Helix 137	AP2	H	246	253	Right-handed 310
Helix 138	AP3	H	254	268	Right-handed alpha
Helix 139	AP4	H	269	285	Right-handed alpha
Helix 140	AP5	H	286	297	Right-handed alpha
Helix 141	AP6	H	300	311	Right-handed alpha
Helix 142	AP7	H	313	327	Right-handed alpha
Helix 143	AP8	I	26	36	Right-handed alpha
Helix 144	AP9	I	48	57	Right-handed alpha
Helix 145	AQ1	I	82	90	Right-handed alpha
Helix 146	AQ2	I	90	96	Right-handed alpha
Helix 147	AQ3	I	135	140	Right-handed alpha
Helix 148	AQ4	I	141	143	Right-handed 310
Helix 149	AQ5	I	159	171	Right-handed alpha
Helix 150	AQ6	I	184	194	Right-handed alpha
Helix 151	AQ7	I	197	216	Right-handed alpha
Helix 152	AQ8	I	220	229	Right-handed alpha
Helix 153	AQ9	I	235	244	Right-handed alpha
Helix 154	AR1	I	246	253	Right-handed 310
Helix 155	AR2	I	254	268	Right-handed alpha
Helix 156	AR3	I	269	285	Right-handed alpha
Helix 157	AR4	I	286	296	Right-handed alpha
Helix 158	AR5	I	300	311	Right-handed alpha
Helix 159	AR6	I	313	324	Right-handed alpha
Helix 160	AR7	J	25	28	Right-handed 310
Helix 161	AR8	J	29	35	Right-handed alpha
Helix 162	AR9	J	48	54	Right-handed alpha
Helix 163	AS1	J	55	58	Right-handed 310
Helix 164	AS2	J	64	69	Right-handed alpha
Helix 165	AS3	J	82	90	Right-handed alpha
Helix 166	AS4	J	91	96	Right-handed alpha
Helix 167	AS5	J	133	142	Right-handed alpha
Helix 168	AS6	J	160	171	Right-handed alpha
Helix 169	AS7	J	184	194	Right-handed alpha
Helix 170	AS8	J	197	216	Right-handed alpha
Helix 171	AS9	J	220	229	Right-handed alpha
Helix 172	AT1	J	232	244	Right-handed alpha
Helix 173	AT2	J	246	253	Right-handed 310
Helix 174	AT3	J	254	268	Right-handed alpha
Helix 175	AT4	J	269	285	Right-handed alpha
Helix 176	AT5	J	286	296	Right-handed alpha
Helix 177	AT6	J	300	311	Right-handed alpha
Helix 178	AT7	J	318	324	Right-handed alpha
Helix 179	AT8	K	28	37	Right-handed alpha
Helix 180	AT9	K	48	53	Right-handed alpha
Helix 181	AU1	K	66	71	Right-handed alpha
Helix 182	AU2	K	83	88	Right-handed alpha
Helix 183	AU3	K	90	96	Right-handed alpha
Helix 184	AU4	K	135	141	Right-handed alpha
Helix 185	AU5	K	159	171	Right-handed alpha
Helix 186	AU6	K	184	194	Right-handed alpha
Helix 187	AU7	K	197	216	Right-handed alpha
Helix 188	AU8	K	220	229	Right-handed alpha
Helix 189	AU9	K	234	237	Right-handed 310
Helix 190	AV1	K	238	244	Right-handed alpha
Helix 191	AV2	K	247	253	Right-handed 310
Helix 192	AV3	K	254	268	Right-handed alpha
Helix 193	AV4	K	269	285	Right-handed alpha
Helix 194	AV5	K	286	296	Right-handed alpha
Helix 195	AV6	K	302	311	Right-handed alpha
Helix 196	AV7	K	318	327	Right-handed alpha
Helix 197	AV8	L	25	27	Right-handed 310
Helix 198	AV9	L	28	37	Right-handed alpha
Helix 199	AW1	L	48	56	Right-handed alpha
Helix 200	AW2	L	63	71	Right-handed alpha
Helix 201	AW3	L	82	90	Right-handed alpha
Helix 202	AW4	L	90	96	Right-handed alpha
Helix 203	AW5	L	135	140	Right-handed alpha
Helix 204	AW6	L	159	171	Right-handed alpha
Helix 205	AW7	L	184	194	Right-handed alpha
Helix 206	AW8	L	197	218	Right-handed alpha
Helix 207	AW9	L	220	229	Right-handed alpha
Helix 208	AX1	L	232	237	Right-handed alpha
Helix 209	AX2	L	237	244	Right-handed alpha
Helix 210	AX3	L	246	252	Right-handed 310
Helix 211	AX4	L	254	268	Right-handed alpha
Helix 212	AX5	L	269	285	Right-handed alpha
Helix 213	AX6	L	287	296	Right-handed alpha
Helix 214	AX7	L	300	311	Right-handed alpha
Helix 215	AX8	L	313	327	Right-handed alpha

There are 23 sheets in PDB entry 6JD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	41	44	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	101	105	parallel
Strand 3	A	122	129	parallel
Strand 4	A	148	151	anti-parallel
Strand 5	A	179	180	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	179	180	anti-parallel
Strand 3	B	148	151	parallel
Strand 4	B	122	129	anti-parallel
Strand 5	B	101	105	parallel
Strand 6	B	73	76	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	41	44	parallel
Strand 3	B	60	62	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	41	44	parallel
Strand 3	C	18	21	parallel
Strand 4	C	73	76	parallel
Strand 5	C	101	104	parallel
Strand 6	C	122	124	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	148	149	anti-parallel
Strand 3	C	179	180	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	18	21	parallel
Strand 3	D	73	76	parallel
Strand 4	D	101	105	parallel
Strand 5	D	122	129	parallel
Strand 6	D	148	152	anti-parallel
Strand 7	D	179	180	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	179	180	anti-parallel
Strand 3	E	148	155	parallel
Strand 4	E	123	129	anti-parallel
Strand 5	E	102	105	parallel
Strand 6	E	73	76	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	21	first strand
Strand 2	E	41	44	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	21	first strand
Strand 2	F	41	44	parallel
Strand 3	F	60	62	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	76	first strand
Strand 2	F	102	105	parallel
Strand 3	F	123	128	parallel
Strand 4	F	148	151	anti-parallel
Strand 5	F	179	180	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	178	180	anti-parallel
Strand 3	G	147	151	parallel
Strand 4	G	122	129	anti-parallel
Strand 5	G	101	105	parallel
Strand 6	G	73	75	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	21	first strand
Strand 2	G	41	44	parallel
Strand 3	G	60	61	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	21	first strand
Strand 2	H	41	44	parallel
Strand 3	H	60	62	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	105	first strand
Strand 2	H	122	126	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	148	149	anti-parallel
Strand 3	H	179	180	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	179	180	anti-parallel
Strand 3	I	148	151	parallel
Strand 4	I	122	129	anti-parallel
Strand 5	I	101	105	parallel
Strand 6	I	73	76	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	21	first strand
Strand 2	I	41	44	parallel
Strand 3	I	60	61	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	179	180	anti-parallel
Strand 3	J	148	149	parallel
Strand 4	J	128	129	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	21	first strand
Strand 2	J	41	44	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	73	75	first strand
Strand 2	J	101	105	parallel
Strand 3	J	122	126	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	179	181	anti-parallel
Strand 3	K	148	151	parallel
Strand 4	K	123	129	anti-parallel
Strand 5	K	102	105	parallel
Strand 6	K	74	76	parallel
Strand 7	K	18	21	parallel
Strand 8	K	41	44	parallel
Strand 9	K	60	61	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	179	181	anti-parallel
Strand 3	L	148	151	parallel
Strand 4	L	122	129	anti-parallel
Strand 5	L	101	105	parallel
Strand 6	L	75	76	parallel
Strand 7	L	18	21	parallel
Strand 8	L	41	44	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JD1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD1