Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JD2 entry

There are 12 chains in PDB entry 6JD2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LYS 329
B	LYS 3	ARG 328
C	ASP 2	ARG 328
D	LYS 3	ARG 328
E	LYS 3	ARG 328
F	LYS 3	ARG 328
G	ASP 2	LYS 329
H	LYS 3	ARG 328
I	LYS 3	ARG 328
J	ASP 2	VAL 330
K	LYS 3	VAL 330
L	LYS 3	LYS 331

There are216 helices in PDB entry 6JD2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	14	Right-handed 310
Helix 2	AA2	A	24	37	Right-handed alpha
Helix 3	AA3	A	48	57	Right-handed alpha
Helix 4	AA4	A	63	70	Right-handed alpha
Helix 5	AA5	A	79	91	Right-handed alpha
Helix 6	AA6	A	91	98	Right-handed alpha
Helix 7	AA7	A	108	113	Right-handed alpha
Helix 8	AA8	A	133	142	Right-handed alpha
Helix 9	AA9	A	159	171	Right-handed alpha
Helix 10	AB1	A	183	197	Right-handed alpha
Helix 11	AB2	A	197	218	Right-handed alpha
Helix 12	AB3	A	220	229	Right-handed alpha
Helix 13	AB4	A	232	245	Right-handed alpha
Helix 14	AB5	A	247	253	Right-handed 310
Helix 15	AB6	A	254	285	Right-handed alpha
Helix 16	AB7	A	286	298	Right-handed alpha
Helix 17	AB8	A	300	312	Right-handed alpha
Helix 18	AB9	A	313	327	Right-handed alpha
Helix 19	AC1	B	10	14	Right-handed 310
Helix 20	AC2	B	24	37	Right-handed alpha
Helix 21	AC3	B	48	57	Right-handed alpha
Helix 22	AC4	B	63	70	Right-handed alpha
Helix 23	AC5	B	79	91	Right-handed alpha
Helix 24	AC6	B	91	98	Right-handed alpha
Helix 25	AC7	B	108	113	Right-handed alpha
Helix 26	AC8	B	133	142	Right-handed alpha
Helix 27	AC9	B	159	171	Right-handed alpha
Helix 28	AD1	B	183	197	Right-handed alpha
Helix 29	AD2	B	197	218	Right-handed alpha
Helix 30	AD3	B	220	229	Right-handed alpha
Helix 31	AD4	B	232	245	Right-handed alpha
Helix 32	AD5	B	247	253	Right-handed 310
Helix 33	AD6	B	254	285	Right-handed alpha
Helix 34	AD7	B	286	298	Right-handed alpha
Helix 35	AD8	B	300	312	Right-handed alpha
Helix 36	AD9	B	313	326	Right-handed alpha
Helix 37	AE1	C	10	14	Right-handed 310
Helix 38	AE2	C	24	37	Right-handed alpha
Helix 39	AE3	C	48	57	Right-handed alpha
Helix 40	AE4	C	63	70	Right-handed alpha
Helix 41	AE5	C	79	91	Right-handed alpha
Helix 42	AE6	C	91	96	Right-handed alpha
Helix 43	AE7	C	108	113	Right-handed alpha
Helix 44	AE8	C	133	142	Right-handed alpha
Helix 45	AE9	C	159	171	Right-handed alpha
Helix 46	AF1	C	183	197	Right-handed alpha
Helix 47	AF2	C	197	218	Right-handed alpha
Helix 48	AF3	C	220	229	Right-handed alpha
Helix 49	AF4	C	232	245	Right-handed alpha
Helix 50	AF5	C	247	253	Right-handed 310
Helix 51	AF6	C	254	285	Right-handed alpha
Helix 52	AF7	C	286	298	Right-handed alpha
Helix 53	AF8	C	300	312	Right-handed alpha
Helix 54	AF9	C	313	327	Right-handed alpha
Helix 55	AG1	D	10	14	Right-handed 310
Helix 56	AG2	D	24	37	Right-handed alpha
Helix 57	AG3	D	48	57	Right-handed alpha
Helix 58	AG4	D	63	70	Right-handed alpha
Helix 59	AG5	D	79	91	Right-handed alpha
Helix 60	AG6	D	91	96	Right-handed alpha
Helix 61	AG7	D	108	113	Right-handed alpha
Helix 62	AG8	D	133	142	Right-handed alpha
Helix 63	AG9	D	159	171	Right-handed alpha
Helix 64	AH1	D	183	197	Right-handed alpha
Helix 65	AH2	D	197	218	Right-handed alpha
Helix 66	AH3	D	220	229	Right-handed alpha
Helix 67	AH4	D	232	245	Right-handed alpha
Helix 68	AH5	D	247	253	Right-handed 310
Helix 69	AH6	D	254	285	Right-handed alpha
Helix 70	AH7	D	286	298	Right-handed alpha
Helix 71	AH8	D	300	312	Right-handed alpha
Helix 72	AH9	D	313	327	Right-handed alpha
Helix 73	AI1	E	10	14	Right-handed 310
Helix 74	AI2	E	24	37	Right-handed alpha
Helix 75	AI3	E	48	57	Right-handed alpha
Helix 76	AI4	E	63	70	Right-handed alpha
Helix 77	AI5	E	79	91	Right-handed alpha
Helix 78	AI6	E	91	98	Right-handed alpha
Helix 79	AI7	E	108	113	Right-handed alpha
Helix 80	AI8	E	133	142	Right-handed alpha
Helix 81	AI9	E	159	171	Right-handed alpha
Helix 82	AJ1	E	183	197	Right-handed alpha
Helix 83	AJ2	E	197	218	Right-handed alpha
Helix 84	AJ3	E	220	229	Right-handed alpha
Helix 85	AJ4	E	232	245	Right-handed alpha
Helix 86	AJ5	E	247	253	Right-handed 310
Helix 87	AJ6	E	254	285	Right-handed alpha
Helix 88	AJ7	E	286	298	Right-handed alpha
Helix 89	AJ8	E	300	312	Right-handed alpha
Helix 90	AJ9	E	313	327	Right-handed alpha
Helix 91	AK1	F	10	14	Right-handed 310
Helix 92	AK2	F	24	37	Right-handed alpha
Helix 93	AK3	F	48	57	Right-handed alpha
Helix 94	AK4	F	63	70	Right-handed alpha
Helix 95	AK5	F	79	91	Right-handed alpha
Helix 96	AK6	F	91	96	Right-handed alpha
Helix 97	AK7	F	108	113	Right-handed alpha
Helix 98	AK8	F	133	142	Right-handed alpha
Helix 99	AK9	F	159	171	Right-handed alpha
Helix 100	AL1	F	183	197	Right-handed alpha
Helix 101	AL2	F	197	218	Right-handed alpha
Helix 102	AL3	F	220	229	Right-handed alpha
Helix 103	AL4	F	232	245	Right-handed alpha
Helix 104	AL5	F	247	253	Right-handed 310
Helix 105	AL6	F	254	285	Right-handed alpha
Helix 106	AL7	F	286	298	Right-handed alpha
Helix 107	AL8	F	300	312	Right-handed alpha
Helix 108	AL9	F	313	326	Right-handed alpha
Helix 109	AM1	G	10	14	Right-handed 310
Helix 110	AM2	G	24	37	Right-handed alpha
Helix 111	AM3	G	48	57	Right-handed alpha
Helix 112	AM4	G	63	70	Right-handed alpha
Helix 113	AM5	G	79	91	Right-handed alpha
Helix 114	AM6	G	91	96	Right-handed alpha
Helix 115	AM7	G	108	113	Right-handed alpha
Helix 116	AM8	G	133	142	Right-handed alpha
Helix 117	AM9	G	159	171	Right-handed alpha
Helix 118	AN1	G	183	197	Right-handed alpha
Helix 119	AN2	G	197	218	Right-handed alpha
Helix 120	AN3	G	220	229	Right-handed alpha
Helix 121	AN4	G	232	245	Right-handed alpha
Helix 122	AN5	G	247	253	Right-handed 310
Helix 123	AN6	G	254	285	Right-handed alpha
Helix 124	AN7	G	286	298	Right-handed alpha
Helix 125	AN8	G	300	312	Right-handed alpha
Helix 126	AN9	G	313	327	Right-handed alpha
Helix 127	AO1	H	10	14	Right-handed 310
Helix 128	AO2	H	24	37	Right-handed alpha
Helix 129	AO3	H	48	57	Right-handed alpha
Helix 130	AO4	H	63	70	Right-handed alpha
Helix 131	AO5	H	79	91	Right-handed alpha
Helix 132	AO6	H	91	96	Right-handed alpha
Helix 133	AO7	H	108	113	Right-handed alpha
Helix 134	AO8	H	133	142	Right-handed alpha
Helix 135	AO9	H	159	171	Right-handed alpha
Helix 136	AP1	H	183	197	Right-handed alpha
Helix 137	AP2	H	197	218	Right-handed alpha
Helix 138	AP3	H	220	229	Right-handed alpha
Helix 139	AP4	H	232	245	Right-handed alpha
Helix 140	AP5	H	247	253	Right-handed 310
Helix 141	AP6	H	254	285	Right-handed alpha
Helix 142	AP7	H	286	298	Right-handed alpha
Helix 143	AP8	H	300	312	Right-handed alpha
Helix 144	AP9	H	313	326	Right-handed alpha
Helix 145	AQ1	I	10	14	Right-handed 310
Helix 146	AQ2	I	24	37	Right-handed alpha
Helix 147	AQ3	I	48	57	Right-handed alpha
Helix 148	AQ4	I	63	70	Right-handed alpha
Helix 149	AQ5	I	79	91	Right-handed alpha
Helix 150	AQ6	I	91	98	Right-handed alpha
Helix 151	AQ7	I	108	113	Right-handed alpha
Helix 152	AQ8	I	133	142	Right-handed alpha
Helix 153	AQ9	I	159	171	Right-handed alpha
Helix 154	AR1	I	183	197	Right-handed alpha
Helix 155	AR2	I	197	218	Right-handed alpha
Helix 156	AR3	I	220	229	Right-handed alpha
Helix 157	AR4	I	232	245	Right-handed alpha
Helix 158	AR5	I	247	253	Right-handed 310
Helix 159	AR6	I	254	285	Right-handed alpha
Helix 160	AR7	I	286	298	Right-handed alpha
Helix 161	AR8	I	300	312	Right-handed alpha
Helix 162	AR9	I	313	327	Right-handed alpha
Helix 163	AS1	J	10	14	Right-handed 310
Helix 164	AS2	J	24	37	Right-handed alpha
Helix 165	AS3	J	48	57	Right-handed alpha
Helix 166	AS4	J	63	70	Right-handed alpha
Helix 167	AS5	J	79	91	Right-handed alpha
Helix 168	AS6	J	91	98	Right-handed alpha
Helix 169	AS7	J	108	113	Right-handed alpha
Helix 170	AS8	J	133	142	Right-handed alpha
Helix 171	AS9	J	159	171	Right-handed alpha
Helix 172	AT1	J	183	197	Right-handed alpha
Helix 173	AT2	J	197	218	Right-handed alpha
Helix 174	AT3	J	220	229	Right-handed alpha
Helix 175	AT4	J	232	245	Right-handed alpha
Helix 176	AT5	J	247	253	Right-handed 310
Helix 177	AT6	J	254	285	Right-handed alpha
Helix 178	AT7	J	286	298	Right-handed alpha
Helix 179	AT8	J	300	312	Right-handed alpha
Helix 180	AT9	J	313	327	Right-handed alpha
Helix 181	AU1	K	10	14	Right-handed 310
Helix 182	AU2	K	24	37	Right-handed alpha
Helix 183	AU3	K	48	57	Right-handed alpha
Helix 184	AU4	K	63	70	Right-handed alpha
Helix 185	AU5	K	79	91	Right-handed alpha
Helix 186	AU6	K	91	98	Right-handed alpha
Helix 187	AU7	K	108	113	Right-handed alpha
Helix 188	AU8	K	133	142	Right-handed alpha
Helix 189	AU9	K	159	171	Right-handed alpha
Helix 190	AV1	K	183	197	Right-handed alpha
Helix 191	AV2	K	197	218	Right-handed alpha
Helix 192	AV3	K	220	229	Right-handed alpha
Helix 193	AV4	K	232	245	Right-handed alpha
Helix 194	AV5	K	247	253	Right-handed 310
Helix 195	AV6	K	254	285	Right-handed alpha
Helix 196	AV7	K	286	298	Right-handed alpha
Helix 197	AV8	K	300	312	Right-handed alpha
Helix 198	AV9	K	313	327	Right-handed alpha
Helix 199	AW1	L	10	14	Right-handed 310
Helix 200	AW2	L	24	37	Right-handed alpha
Helix 201	AW3	L	48	57	Right-handed alpha
Helix 202	AW4	L	63	70	Right-handed alpha
Helix 203	AW5	L	79	91	Right-handed alpha
Helix 204	AW6	L	91	98	Right-handed alpha
Helix 205	AW7	L	108	113	Right-handed alpha
Helix 206	AW8	L	133	142	Right-handed alpha
Helix 207	AW9	L	159	171	Right-handed alpha
Helix 208	AX1	L	183	197	Right-handed alpha
Helix 209	AX2	L	197	218	Right-handed alpha
Helix 210	AX3	L	220	229	Right-handed alpha
Helix 211	AX4	L	232	245	Right-handed alpha
Helix 212	AX5	L	247	253	Right-handed 310
Helix 213	AX6	L	254	285	Right-handed alpha
Helix 214	AX7	L	286	298	Right-handed alpha
Helix 215	AX8	L	300	312	Right-handed alpha
Helix 216	AX9	L	313	327	Right-handed alpha

There are 12 sheets in PDB entry 6JD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	179	181	anti-parallel
Strand 3	A	148	154	parallel
Strand 4	A	122	129	anti-parallel
Strand 5	A	101	105	parallel
Strand 6	A	73	76	parallel
Strand 7	A	17	21	parallel
Strand 8	A	40	44	parallel
Strand 9	A	61	62	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	178	181	anti-parallel
Strand 3	B	147	154	parallel
Strand 4	B	122	129	anti-parallel
Strand 5	B	101	105	parallel
Strand 6	B	73	76	parallel
Strand 7	B	17	21	parallel
Strand 8	B	40	44	parallel
Strand 9	B	61	62	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	179	181	anti-parallel
Strand 3	C	148	154	parallel
Strand 4	C	122	129	anti-parallel
Strand 5	C	101	105	parallel
Strand 6	C	73	76	parallel
Strand 7	C	17	21	parallel
Strand 8	C	40	44	parallel
Strand 9	C	61	62	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	178	181	anti-parallel
Strand 3	D	147	154	parallel
Strand 4	D	122	129	anti-parallel
Strand 5	D	101	105	parallel
Strand 6	D	73	76	parallel
Strand 7	D	17	21	parallel
Strand 8	D	40	44	parallel
Strand 9	D	61	62	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	179	181	anti-parallel
Strand 3	E	148	154	parallel
Strand 4	E	122	129	anti-parallel
Strand 5	E	101	105	parallel
Strand 6	E	73	76	parallel
Strand 7	E	17	21	parallel
Strand 8	E	40	44	parallel
Strand 9	E	61	62	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	179	181	anti-parallel
Strand 3	F	148	154	parallel
Strand 4	F	122	129	anti-parallel
Strand 5	F	101	105	parallel
Strand 6	F	73	76	parallel
Strand 7	F	17	21	parallel
Strand 8	F	40	44	parallel
Strand 9	F	61	62	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	40	44	parallel
Strand 3	G	17	21	parallel
Strand 4	G	73	76	parallel
Strand 5	G	101	105	parallel
Strand 6	G	122	129	parallel
Strand 7	G	148	154	anti-parallel
Strand 8	G	179	181	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	179	181	anti-parallel
Strand 3	H	148	154	parallel
Strand 4	H	122	129	anti-parallel
Strand 5	H	101	105	parallel
Strand 6	H	73	76	parallel
Strand 7	H	17	21	parallel
Strand 8	H	40	44	parallel
Strand 9	H	61	62	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	179	181	anti-parallel
Strand 3	I	148	154	parallel
Strand 4	I	122	129	anti-parallel
Strand 5	I	101	105	parallel
Strand 6	I	73	76	parallel
Strand 7	I	17	21	parallel
Strand 8	I	40	44	parallel
Strand 9	I	61	62	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	178	181	anti-parallel
Strand 3	J	147	154	parallel
Strand 4	J	122	129	anti-parallel
Strand 5	J	101	105	parallel
Strand 6	J	73	76	parallel
Strand 7	J	17	21	parallel
Strand 8	J	40	44	parallel
Strand 9	J	61	62	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	179	181	anti-parallel
Strand 3	K	148	154	parallel
Strand 4	K	122	129	anti-parallel
Strand 5	K	101	105	parallel
Strand 6	K	73	76	parallel
Strand 7	K	17	21	parallel
Strand 8	K	40	44	parallel
Strand 9	K	61	62	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	179	181	anti-parallel
Strand 3	L	148	154	parallel
Strand 4	L	122	129	anti-parallel
Strand 5	L	101	105	parallel
Strand 6	L	73	76	parallel
Strand 7	L	17	21	parallel
Strand 8	L	40	44	parallel
Strand 9	L	61	62	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JD2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD2