Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JD4 entry

There are 2 chains in PDB entry 6JD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 318GLU 578
B
 ALA 318GLU 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6JD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
329 334Right-handed alpha
Helix 2
AA2
A
343 348Right-handed alpha
Helix 3
AA3
A
381 397Right-handed alpha
Helix 4
AA4
A
418 422Right-handed 310
Helix 5
AA5
A
431 448Right-handed alpha
Helix 6
AA6
A
456 460Right-handed 310
Helix 7
AA7
A
477 485Right-handed alpha
Helix 8
AA8
A
494 499Right-handed 310
Helix 9
AA9
A
500 505Right-handed alpha
Helix 10
AB1
A
514 521Right-handed alpha
Helix 11
AB2
A
525 532Right-handed alpha
Helix 12
AB3
A
542 546Right-handed 310
Helix 13
AB4
B
329 334Right-handed alpha
Helix 14
AB5
B
343 348Right-handed alpha
Helix 15
AB6
B
381 397Right-handed alpha
Helix 16
AB7
B
431 448Right-handed alpha
Helix 17
AB8
B
456 463Right-handed alpha
Helix 18
AB9
B
477 485Right-handed alpha
Helix 19
AC1
B
494 499Right-handed 310
Helix 20
AC2
B
500 505Right-handed alpha
Helix 21
AC3
B
514 521Right-handed alpha
Helix 22
AC4
B
525 532Right-handed alpha
Helix 23
AC5
B
542 546Right-handed 310
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There are 2 sheets in PDB entry 6JD4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 365first strand
Strand 2
A
349 355anti-parallel
Strand 3
A
568 573anti-parallel
Strand 4
A
560 565anti-parallel
Strand 5
A
536 538anti-parallel
Strand 6
A
372 376parallel
Strand 7
A
506 513parallel
Strand 8
A
470 475parallel
Strand 9
A
402 407parallel
Strand 10
A
428 429parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 365first strand
Strand 2
B
349 355anti-parallel
Strand 3
B
568 573anti-parallel
Strand 4
B
560 565anti-parallel
Strand 5
B
536 538anti-parallel
Strand 6
B
372 376parallel
Strand 7
B
506 513parallel
Strand 8
B
470 475parallel
Strand 9
B
402 407parallel
Strand 10
B
428 429parallel
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