Analysis of interatomic Contacts of Structural Units in PDB entry:
6JD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JD5 entry

There are 2 chains in PDB entry 6JD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1129SER 1391
B
 LEU 1130VAL 1392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6JD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1138 1148Right-handed alpha
Helix 2
AA2
A
1164 1166Right-handed 310
Helix 3
AA3
A
1189 1205Right-handed alpha
Helix 4
AA4
A
1223 1227Right-handed 310
Helix 5
AA5
A
1239 1254Right-handed alpha
Helix 6
AA6
A
1255 1259Right-handed 310
Helix 7
AA7
A
1265 1271Right-handed alpha
Helix 8
AA8
A
1286 1290Right-handed 310
Helix 9
AA9
A
1303 1305Right-handed 310
Helix 10
AB1
A
1306 1312Right-handed alpha
Helix 11
AB2
A
1313 1316Right-handed 310
Helix 12
AB3
A
1331 1334Right-handed 310
Helix 13
AB4
A
1335 1345Right-handed alpha
Helix 14
AB5
B
1138 1148Right-handed alpha
Helix 15
AB6
B
1164 1166Right-handed 310
Helix 16
AB7
B
1189 1205Right-handed alpha
Helix 17
AB8
B
1223 1227Right-handed 310
Helix 18
AB9
B
1239 1254Right-handed alpha
Helix 19
AC1
B
1255 1259Right-handed 310
Helix 20
AC2
B
1265 1272Right-handed alpha
Helix 21
AC3
B
1286 1290Right-handed 310
Helix 22
AC4
B
1303 1305Right-handed 310
Helix 23
AC5
B
1306 1312Right-handed alpha
Helix 24
AC6
B
1313 1316Right-handed 310
Helix 25
AC7
B
1331 1334Right-handed 310
Helix 26
AC8
B
1335 1345Right-handed alpha
Helix 27
AC9
B
1360 1362Right-handed 310
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There are 3 sheets in PDB entry 6JD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1169 1173first strand
Strand 2
A
1156 1162anti-parallel
Strand 3
A
1382 1387anti-parallel
Strand 4
A
1372 1376anti-parallel
Strand 5
A
1347 1350anti-parallel
Strand 6
A
1180 1184parallel
Strand 7
A
1318 1325parallel
Strand 8
A
1279 1284parallel
Strand 9
A
1210 1215parallel
Strand 10
A
1233 1237parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1169 1173first strand
Strand 2
B
1156 1162anti-parallel
Strand 3
B
1382 1387anti-parallel
Strand 4
B
1372 1376anti-parallel
Strand 5
B
1347 1350anti-parallel
Strand 6
B
1180 1184parallel
Strand 7
B
1318 1325parallel
Strand 8
B
1279 1284parallel
Strand 9
B
1210 1215parallel
Strand 10
B
1233 1237parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1358 1359first strand
Strand 2
B
1363 1364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il