Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDB entry

There is 1 chain in PDB entry 6JDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 50Right-handed alpha
Helix 2
AA2
A
75 80Right-handed 310
Helix 3
AA3
A
87 93Right-handed alpha
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
153 157Right-handed 310
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
A
179 188Right-handed alpha
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
207 233Right-handed alpha
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
259 260Right-handed 310
Helix 12
AB3
A
261 265Right-handed 310
Helix 13
AB4
A
273 275Right-handed 310
Helix 14
AB5
A
276 289Right-handed alpha
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There are 3 sheets in PDB entry 6JDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 30first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
57 62parallel
Strand 5
A
99 103parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
70 72anti-parallel
Strand 3
A
84 86anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
133 139anti-parallel
Strand 3
A
123 129anti-parallel
Strand 4
A
236 240parallel
Strand 5
A
267 270parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il