Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDD entry

There is 1 chain in PDB entry 6JDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2SER 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6JDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
23 35Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
76 82Right-handed 310
Helix 6
AA6
A
96 105Right-handed alpha
Helix 7
AA7
A
110 119Right-handed alpha
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
144 146Right-handed 310
Helix 10
AB1
A
171 186Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6JDD.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
39 44parallel
Strand 3
A
10 15parallel
Strand 4
A
90 95parallel
Strand 5
A
123 127parallel
Strand 6
A
149 151parallel
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