Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDL entry

There is 1 chain in PDB entry 6JDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 142VAL 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6JDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 165Right-handed alpha
Helix 2
AA2
A
179 190Right-handed alpha
Helix 3
AA3
A
207 209Right-handed 310
Helix 4
AA4
A
210 217Right-handed alpha
Helix 5
AA5
A
232 237Right-handed alpha
Helix 6
AA6
A
246 250Right-handed 310
Helix 7
AA7
A
251 265Right-handed alpha
Helix 8
AA8
A
289 296Right-handed alpha
Helix 9
AA9
A
300 308Right-handed alpha
Helix 10
AB1
A
316 322Right-handed 310
Helix 11
AB2
A
323 338Right-handed alpha
Helix 12
AB3
A
346 355Right-handed alpha
Helix 13
AB4
A
360 376Right-handed alpha
Helix 14
AB5
A
382 386Right-handed 310
Helix 15
AB6
A
387 391Right-handed 310
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There are 3 sheets in PDB entry 6JDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
240 245parallel
Strand 3
A
280 286parallel
Strand 4
A
170 173parallel
Strand 5
A
310 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
276 277anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
379 381parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il