Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDP entry

There is 1 chain in PDB entry 6JDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLY 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6JDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
25 41Right-handed alpha
Helix 3
AA3
A
42 48Right-handed 310
Helix 4
AA4
A
56 61Right-handed alpha
Helix 5
AA5
A
70 80Right-handed alpha
Helix 6
AA6
A
95 99Right-handed 310
Helix 7
AA7
A
110 112Right-handed 310
Helix 8
AA8
A
121 128Right-handed alpha
Helix 9
AA9
A
130 146Right-handed alpha
Helix 10
AB1
A
157 164Right-handed alpha
Helix 11
AB2
A
183 187Right-handed 310
Helix 12
AB3
A
213 220Right-handed alpha
Helix 13
AB4
A
220 231Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6JDP.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
10 16anti-parallel
Strand 5
A
149 156anti-parallel
Strand 6
A
175 178anti-parallel
Strand 7
A
200 204anti-parallel
Strand 8
A
192 196anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il