Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDQ entry

There are 2 chains in PDB entry 6JDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8SER 1083
B
 U 15 A 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6JDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 89Right-handed alpha
Helix 2
AA2
A
109 117Right-handed alpha
Helix 3
AA3
A
123 137Right-handed alpha
Helix 4
AA4
A
152 172Right-handed alpha
Helix 5
AA5
A
176 189Right-handed alpha
Helix 6
AA6
A
204 222Right-handed alpha
Helix 7
AA7
A
228 241Right-handed alpha
Helix 8
AA8
A
247 255Right-handed alpha
Helix 9
AA9
A
271 286Right-handed alpha
Helix 10
AB1
A
298 307Right-handed alpha
Helix 11
AB2
A
307 312Right-handed alpha
Helix 12
AB3
A
317 324Right-handed alpha
Helix 13
AB4
A
350 364Right-handed alpha
Helix 14
AB5
A
375 389Right-handed alpha
Helix 15
AB6
A
391 400Right-handed alpha
Helix 16
AB7
A
404 415Right-handed alpha
Helix 17
AB8
A
424 436Right-handed alpha
Helix 18
AB9
A
440 449Right-handed alpha
Helix 19
AC1
A
474 496Right-handed alpha
Helix 20
AC2
A
512 539Right-handed alpha
Helix 21
AC3
A
549 562Right-handed alpha
Helix 22
AC4
A
574 578Right-handed 310
Helix 23
AC5
A
591 596Right-handed alpha
Helix 24
AC6
A
599 601Right-handed 310
Helix 25
AC7
A
608 615Right-handed alpha
Helix 26
AC8
A
618 623Right-handed alpha
Helix 27
AC9
A
624 628Right-handed 310
Helix 28
AD1
A
629 641Right-handed alpha
Helix 29
AD2
A
645 653Right-handed alpha
Helix 30
AD3
A
658 668Right-handed alpha
Helix 31
AD4
A
671 685Right-handed alpha
Helix 32
AD5
A
699 710Right-handed alpha
Helix 33
AD6
A
721 733Right-handed alpha
Helix 34
AD7
A
734 750Right-handed alpha
Helix 35
AD8
A
778 789Right-handed alpha
Helix 36
AD9
A
802 814Right-handed alpha
Helix 37
AE1
A
817 821Right-handed 310
Helix 38
AE2
A
868 874Right-handed alpha
Helix 39
AE3
A
881 896Right-handed alpha
Helix 40
AE4
A
898 903Right-handed alpha
Helix 41
AE5
A
965 972Right-handed alpha
Helix 42
AE6
A
984 988Right-handed 310
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There are 10 sheets in PDB entry 6JDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
500 505parallel
Strand 3
A
11 17parallel
Strand 4
A
21 29anti-parallel
Strand 5
A
35 45anti-parallel
Strand 6
A
831 832parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
287 290anti-parallel
Strand 3
A
330 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
346 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 588first strand
Strand 2
A
603 607anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 849first strand
Strand 2
A
940 944anti-parallel
Strand 3
A
933 935anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 863first strand
Strand 2
A
922 928anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 910first strand
Strand 2
A
916 920anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 964first strand
Strand 2
A
949 955anti-parallel
Strand 3
A
996 1001anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
977 978first strand
Strand 2
A
989 990anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1050first strand
Strand 2
A
1030 1033anti-parallel
Strand 3
A
1015 1023anti-parallel
Strand 4
A
1006 1010anti-parallel
Strand 5
A
1057 1062anti-parallel
Strand 6
A
1071 1072anti-parallel
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