Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDR entry

There is 1 chain in PDB entry 6JDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LEU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6JDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
62 68Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
154 163Right-handed alpha
Helix 7
AA7
A
173 185Right-handed alpha
Helix 8
AA8
A
213 215Right-handed 310
Helix 9
AA9
A
226 230Right-handed 310
Helix 10
AB1
A
231 240Right-handed alpha
Helix 11
AB2
A
262 267Right-handed 310
Helix 12
AB3
A
280 288Right-handed alpha
Helix 13
AB4
A
289 291Right-handed 310
Helix 14
AB5
A
320 324Right-handed 310
Helix 15
AB6
A
353 362Right-handed alpha
Helix 16
AB7
A
424 433Right-handed alpha
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There are 5 sheets in PDB entry 6JDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 24anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
118 124anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
100 104anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
168 171parallel
Strand 3
A
222 224parallel
Strand 4
A
245 248parallel
Strand 5
A
145 148parallel
Strand 6
A
270 276parallel
Strand 7
A
294 297parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
364 371parallel
Strand 3
A
339 345parallel
Strand 4
A
315 318parallel
Strand 5
A
329 330parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
400 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il