Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDS entry

There is 1 chain in PDB entry 6JDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LEU 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6JDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
133 143Right-handed alpha
Helix 5
AA5
A
155 163Right-handed alpha
Helix 6
AA6
A
173 185Right-handed alpha
Helix 7
AA7
A
213 215Right-handed 310
Helix 8
AA8
A
226 230Right-handed 310
Helix 9
AA9
A
231 240Right-handed alpha
Helix 10
AB1
A
263 268Right-handed alpha
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There are 3 sheets in PDB entry 6JDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 24anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
118 124anti-parallel
Strand 3
A
93 97anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
111 113anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
168 171parallel
Strand 3
A
222 224parallel
Strand 4
A
245 246parallel
Strand 5
A
145 147parallel
Strand 6
A
270 271parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il