Analysis of interatomic Contacts of Structural Units in PDB entry:
6JDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JDV entry

There are 4 chains in PDB entry 6JDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 1082
B
 G 1 U 146
C
 T 1 C 35
D
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6JDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 89Right-handed alpha
Helix 2
AA2
A
109 117Right-handed alpha
Helix 3
AA3
A
123 137Right-handed alpha
Helix 4
AA4
A
176 189Right-handed alpha
Helix 5
AA5
A
204 222Right-handed alpha
Helix 6
AA6
A
228 241Right-handed alpha
Helix 7
AA7
A
249 255Right-handed alpha
Helix 8
AA8
A
271 285Right-handed alpha
Helix 9
AA9
A
298 307Right-handed alpha
Helix 10
AB1
A
307 312Right-handed alpha
Helix 11
AB2
A
316 324Right-handed alpha
Helix 12
AB3
A
341 345Right-handed 310
Helix 13
AB4
A
350 363Right-handed alpha
Helix 14
AB5
A
375 389Right-handed alpha
Helix 15
AB6
A
391 400Right-handed alpha
Helix 16
AB7
A
404 415Right-handed alpha
Helix 17
AB8
A
424 437Right-handed alpha
Helix 18
AB9
A
440 450Right-handed alpha
Helix 19
AC1
A
474 496Right-handed alpha
Helix 20
AC2
A
512 541Right-handed alpha
Helix 21
AC3
A
549 562Right-handed alpha
Helix 22
AC4
A
591 596Right-handed alpha
Helix 23
AC5
A
599 601Right-handed 310
Helix 24
AC6
A
608 615Right-handed alpha
Helix 25
AC7
A
618 624Right-handed alpha
Helix 26
AC8
A
629 641Right-handed alpha
Helix 27
AC9
A
645 653Right-handed alpha
Helix 28
AD1
A
667 685Right-handed alpha
Helix 29
AD2
A
700 710Right-handed alpha
Helix 30
AD3
A
721 733Right-handed alpha
Helix 31
AD4
A
734 748Right-handed alpha
Helix 32
AD5
A
778 789Right-handed alpha
Helix 33
AD6
A
802 814Right-handed alpha
Helix 34
AD7
A
865 867Right-handed 310
Helix 35
AD8
A
868 873Right-handed alpha
Helix 36
AD9
A
874 879Right-handed 310
Helix 37
AE1
A
881 895Right-handed alpha
Helix 38
AE2
A
898 903Right-handed alpha
Helix 39
AE3
A
966 972Right-handed alpha
Helix 40
AE4
A
984 988Right-handed 310
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There are 10 sheets in PDB entry 6JDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 699first strand
Strand 2
A
500 505parallel
Strand 3
A
11 17parallel
Strand 4
A
21 29anti-parallel
Strand 5
A
35 45anti-parallel
Strand 6
A
831 832parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
287 289anti-parallel
Strand 3
A
331 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 588first strand
Strand 2
A
603 607anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
766 767anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 849first strand
Strand 2
A
940 942anti-parallel
Strand 3
A
933 935anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 863first strand
Strand 2
A
922 928anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 910first strand
Strand 2
A
916 920anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 965first strand
Strand 2
A
947 955anti-parallel
Strand 3
A
996 1001anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
977 978first strand
Strand 2
A
989 990anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1050first strand
Strand 2
A
1030 1033anti-parallel
Strand 3
A
1014 1023anti-parallel
Strand 4
A
1006 1011anti-parallel
Strand 5
A
1057 1061anti-parallel
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