Analysis of interatomic Contacts of Structural Units in PDB entry:
6JE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JE9 entry

There are 6 chains in PDB entry 6JE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	SER 1083
B	U 16	A 133
C	SER 8	SER 1083
D	U 16	A 133
E	SER 0	ILE 116
F	SER 0	ILE 116

There are 92 helices in PDB entry 6JE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	89	Right-handed alpha
Helix 2	AA2	A	109	117	Right-handed alpha
Helix 3	AA3	A	123	137	Right-handed alpha
Helix 4	AA4	A	154	172	Right-handed alpha
Helix 5	AA5	A	176	190	Right-handed alpha
Helix 6	AA6	A	204	223	Right-handed alpha
Helix 7	AA7	A	228	241	Right-handed alpha
Helix 8	AA8	A	247	255	Right-handed alpha
Helix 9	AA9	A	271	286	Right-handed alpha
Helix 10	AB1	A	298	307	Right-handed alpha
Helix 11	AB2	A	307	312	Right-handed alpha
Helix 12	AB3	A	316	325	Right-handed alpha
Helix 13	AB4	A	341	345	Right-handed 310
Helix 14	AB5	A	350	362	Right-handed alpha
Helix 15	AB6	A	375	389	Right-handed alpha
Helix 16	AB7	A	391	403	Right-handed alpha
Helix 17	AB8	A	404	413	Right-handed alpha
Helix 18	AB9	A	424	438	Right-handed alpha
Helix 19	AC1	A	440	450	Right-handed alpha
Helix 20	AC2	A	474	496	Right-handed alpha
Helix 21	AC3	A	512	541	Right-handed alpha
Helix 22	AC4	A	549	562	Right-handed alpha
Helix 23	AC5	A	591	596	Right-handed alpha
Helix 24	AC6	A	618	623	Right-handed alpha
Helix 25	AC7	A	629	641	Right-handed alpha
Helix 26	AC8	A	645	653	Right-handed alpha
Helix 27	AC9	A	658	668	Right-handed alpha
Helix 28	AD1	A	671	685	Right-handed alpha
Helix 29	AD2	A	699	710	Right-handed alpha
Helix 30	AD3	A	721	733	Right-handed alpha
Helix 31	AD4	A	734	750	Right-handed alpha
Helix 32	AD5	A	778	789	Right-handed alpha
Helix 33	AD6	A	802	814	Right-handed alpha
Helix 34	AD7	A	817	821	Right-handed 310
Helix 35	AD8	A	868	873	Right-handed alpha
Helix 36	AD9	A	881	894	Right-handed alpha
Helix 37	AE1	A	895	897	Right-handed 310
Helix 38	AE2	A	898	903	Right-handed alpha
Helix 39	AE3	A	966	972	Right-handed alpha
Helix 40	AE4	C	57	89	Right-handed alpha
Helix 41	AE5	C	109	117	Right-handed alpha
Helix 42	AE6	C	123	137	Right-handed alpha
Helix 43	AE7	C	153	172	Right-handed alpha
Helix 44	AE8	C	176	189	Right-handed alpha
Helix 45	AE9	C	204	223	Right-handed alpha
Helix 46	AF1	C	228	241	Right-handed alpha
Helix 47	AF2	C	247	255	Right-handed alpha
Helix 48	AF3	C	271	286	Right-handed alpha
Helix 49	AF4	C	298	307	Right-handed alpha
Helix 50	AF5	C	307	312	Right-handed alpha
Helix 51	AF6	C	316	325	Right-handed alpha
Helix 52	AF7	C	341	345	Right-handed 310
Helix 53	AF8	C	350	362	Right-handed alpha
Helix 54	AF9	C	375	389	Right-handed alpha
Helix 55	AG1	C	391	403	Right-handed alpha
Helix 56	AG2	C	404	414	Right-handed alpha
Helix 57	AG3	C	424	438	Right-handed alpha
Helix 58	AG4	C	440	448	Right-handed alpha
Helix 59	AG5	C	474	496	Right-handed alpha
Helix 60	AG6	C	512	541	Right-handed alpha
Helix 61	AG7	C	549	562	Right-handed alpha
Helix 62	AG8	C	591	596	Right-handed alpha
Helix 63	AG9	C	607	612	Right-handed alpha
Helix 64	AH1	C	618	623	Right-handed alpha
Helix 65	AH2	C	630	641	Right-handed alpha
Helix 66	AH3	C	645	653	Right-handed alpha
Helix 67	AH4	C	658	666	Right-handed alpha
Helix 68	AH5	C	671	685	Right-handed alpha
Helix 69	AH6	C	699	710	Right-handed alpha
Helix 70	AH7	C	721	733	Right-handed alpha
Helix 71	AH8	C	734	750	Right-handed alpha
Helix 72	AH9	C	778	789	Right-handed alpha
Helix 73	AI1	C	802	814	Right-handed alpha
Helix 74	AI2	C	865	867	Right-handed 310
Helix 75	AI3	C	868	873	Right-handed alpha
Helix 76	AI4	C	881	895	Right-handed alpha
Helix 77	AI5	C	898	903	Right-handed alpha
Helix 78	AI6	C	966	972	Right-handed alpha
Helix 79	AI7	C	984	988	Right-handed 310
Helix 80	AI8	E	18	33	Right-handed alpha
Helix 81	AI9	E	34	38	Right-handed 310
Helix 82	AJ1	E	45	50	Right-handed alpha
Helix 83	AJ2	E	63	80	Right-handed alpha
Helix 84	AJ3	E	91	97	Right-handed alpha
Helix 85	AJ4	E	98	100	Right-handed 310
Helix 86	AJ5	E	101	110	Right-handed alpha
Helix 87	AJ6	F	18	33	Right-handed alpha
Helix 88	AJ7	F	37	41	Right-handed 310
Helix 89	AJ8	F	45	50	Right-handed alpha
Helix 90	AJ9	F	63	80	Right-handed alpha
Helix 91	AK1	F	91	97	Right-handed alpha
Helix 92	AK2	F	101	109	Right-handed alpha

There are 19 sheets in PDB entry 6JE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	500	505	parallel
Strand 3	A	11	18	parallel
Strand 4	A	21	29	anti-parallel
Strand 5	A	35	45	anti-parallel
Strand 6	A	831	832	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	330	332	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	588	first strand
Strand 2	A	603	607	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	863	first strand
Strand 2	A	922	927	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	910	first strand
Strand 2	A	916	920	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	933	935	first strand
Strand 2	A	940	942	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	965	first strand
Strand 2	A	947	954	anti-parallel
Strand 3	A	996	1001	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	989	990	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1046	1051	first strand
Strand 2	A	1029	1033	anti-parallel
Strand 3	A	1015	1023	anti-parallel
Strand 4	A	1006	1010	anti-parallel
Strand 5	A	1057	1062	anti-parallel
Strand 6	A	1071	1072	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	695	697	first strand
Strand 2	C	500	505	parallel
Strand 3	C	11	18	parallel
Strand 4	C	21	29	anti-parallel
Strand 5	C	35	45	anti-parallel
Strand 6	C	831	832	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	330	332	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	588	first strand
Strand 2	C	603	606	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	858	863	first strand
Strand 2	C	922	927	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	933	935	first strand
Strand 2	C	940	942	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	959	965	first strand
Strand 2	C	947	954	anti-parallel
Strand 3	C	996	1001	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	977	978	first strand
Strand 2	C	989	990	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1046	1051	first strand
Strand 2	C	1029	1033	anti-parallel
Strand 3	C	1015	1023	anti-parallel
Strand 4	C	1006	1010	anti-parallel
Strand 5	C	1057	1062	anti-parallel
Strand 6	C	1071	1072	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	57	first strand
Strand 2	E	3	11	anti-parallel
Strand 3	E	82	90	anti-parallel
Strand 4	E	111	115	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	59	first strand
Strand 2	F	2	11	anti-parallel
Strand 3	F	82	90	anti-parallel
Strand 4	F	111	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JE9