Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JEB entry

There is 1 chain in PDB entry 6JEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22GLU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6JEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 95Right-handed alpha
Helix 2
AA2
A
126 140Right-handed alpha
Helix 3
AA3
A
163 168Right-handed alpha
Helix 4
AA4
A
187 200Right-handed alpha
Helix 5
AA5
A
215 222Right-handed alpha
Helix 6
AA6
A
223 226Right-handed 310
Helix 7
AA7
A
250 268Right-handed alpha
Helix 8
AA8
A
282 288Right-handed alpha
Helix 9
AA9
A
288 299Right-handed alpha
Helix 10
AB1
A
302 321Right-handed alpha
Helix 11
AB2
A
332 336Right-handed 310
Helix 12
AB3
A
349 361Right-handed alpha
Helix 13
AB4
A
392 398Right-handed alpha
Helix 14
AB5
A
406 411Right-handed alpha
Helix 15
AB6
A
427 436Right-handed alpha
Helix 16
AB7
A
437 448Right-handed alpha
Helix 17
AB8
A
449 453Right-handed 310
Helix 18
AB9
A
454 474Right-handed alpha
Helix 19
AC1
A
480 484Right-handed 310
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There are 3 sheets in PDB entry 6JEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 41first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
68 73anti-parallel
Strand 5
A
46 51parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
144 148parallel
Strand 3
A
204 208parallel
Strand 4
A
272 274parallel
Strand 5
A
324 328parallel
Strand 6
A
341 344parallel
Strand 7
A
363 366parallel
Strand 8
A
413 420parallel
Strand 9
A
113 118parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
182 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il