Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JEG entry

There are 2 chains in PDB entry 6JEG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	ALA 755
B	GLU 28	GLU 607

There are 60 helices in PDB entry 6JEG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	35	Right-handed 310
Helix 2	AA2	A	55	59	Right-handed 310
Helix 3	AA3	A	94	112	Right-handed alpha
Helix 4	AA4	A	127	134	Right-handed alpha
Helix 5	AA5	A	179	183	Right-handed 310
Helix 6	AA6	A	206	223	Right-handed alpha
Helix 7	AA7	A	240	248	Right-handed alpha
Helix 8	AA8	A	266	270	Right-handed 310
Helix 9	AA9	A	295	299	Right-handed 310
Helix 10	AB1	A	310	312	Right-handed 310
Helix 11	AB2	A	324	330	Right-handed alpha
Helix 12	AB3	A	330	342	Right-handed alpha
Helix 13	AB4	A	359	364	Right-handed alpha
Helix 14	AB5	A	384	388	Right-handed 310
Helix 15	AB6	A	396	402	Right-handed 310
Helix 16	AB7	A	403	411	Right-handed alpha
Helix 17	AB8	A	434	438	Right-handed 310
Helix 18	AB9	A	472	490	Right-handed alpha
Helix 19	AC1	A	505	510	Right-handed alpha
Helix 20	AC2	A	557	561	Right-handed 310
Helix 21	AC3	A	584	599	Right-handed alpha
Helix 22	AC4	A	611	617	Right-handed alpha
Helix 23	AC5	A	630	632	Right-handed 310
Helix 24	AC6	A	633	638	Right-handed alpha
Helix 25	AC7	A	647	651	Right-handed 310
Helix 26	AC8	A	662	666	Right-handed 310
Helix 27	AC9	A	689	695	Right-handed alpha
Helix 28	AD1	A	695	707	Right-handed alpha
Helix 29	AD2	A	726	731	Right-handed alpha
Helix 30	AD3	A	744	755	Right-handed alpha
Helix 31	AD4	B	29	34	Right-handed alpha
Helix 32	AD5	B	55	59	Right-handed 310
Helix 33	AD6	B	94	112	Right-handed alpha
Helix 34	AD7	B	127	133	Right-handed alpha
Helix 35	AD8	B	179	183	Right-handed 310
Helix 36	AD9	B	206	223	Right-handed alpha
Helix 37	AE1	B	240	248	Right-handed alpha
Helix 38	AE2	B	265	269	Right-handed 310
Helix 39	AE3	B	297	299	Right-handed 310
Helix 40	AE4	B	310	312	Right-handed 310
Helix 41	AE5	B	324	330	Right-handed alpha
Helix 42	AE6	B	330	342	Right-handed alpha
Helix 43	AE7	B	359	364	Right-handed alpha
Helix 44	AE8	B	384	388	Right-handed 310
Helix 45	AE9	B	396	402	Right-handed 310
Helix 46	AF1	B	403	411	Right-handed alpha
Helix 47	AF2	B	434	438	Right-handed 310
Helix 48	AF3	B	472	490	Right-handed alpha
Helix 49	AF4	B	505	510	Right-handed alpha
Helix 50	AF5	B	557	561	Right-handed 310
Helix 51	AF6	B	584	598	Right-handed alpha
Helix 52	AF7	B	612	617	Right-handed alpha
Helix 53	AF8	B	630	632	Right-handed 310
Helix 54	AF9	B	633	638	Right-handed alpha
Helix 55	AG1	B	647	651	Right-handed 310
Helix 56	AG2	B	662	666	Right-handed 310
Helix 57	AG3	B	689	695	Right-handed alpha
Helix 58	AG4	B	695	707	Right-handed alpha
Helix 59	AG5	B	726	731	Right-handed alpha
Helix 60	AG6	B	744	755	Right-handed alpha

There are 9 sheets in PDB entry 6JEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	40	46	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	81	89	anti-parallel
Strand 5	A	116	122	parallel
Strand 6	A	349	354	anti-parallel
Strand 7	A	314	319	parallel
Strand 8	A	304	309	anti-parallel
Strand 9	A	272	277	anti-parallel
Strand 10	A	284	289	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	138	141	parallel
Strand 3	A	172	175	parallel
Strand 4	A	161	166	anti-parallel
Strand 5	A	188	192	anti-parallel
Strand 6	A	196	201	anti-parallel
Strand 7	A	230	235	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	432	first strand
Strand 2	A	420	426	anti-parallel
Strand 3	A	446	455	anti-parallel
Strand 4	A	458	467	anti-parallel
Strand 5	A	495	500	parallel
Strand 6	A	717	721	anti-parallel
Strand 7	A	680	684	parallel
Strand 8	A	671	675	anti-parallel
Strand 9	A	641	646	anti-parallel
Strand 10	A	653	656	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	517	520	parallel
Strand 3	A	549	554	parallel
Strand 4	A	537	543	anti-parallel
Strand 5	A	566	570	anti-parallel
Strand 6	A	575	579	anti-parallel
Strand 7	A	602	606	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	67	75	anti-parallel
Strand 4	B	81	89	anti-parallel
Strand 5	B	117	122	parallel
Strand 6	B	349	354	anti-parallel
Strand 7	B	314	319	parallel
Strand 8	B	304	309	anti-parallel
Strand 9	B	272	277	anti-parallel
Strand 10	B	284	289	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	138	141	parallel
Strand 3	B	172	176	parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	188	192	anti-parallel
Strand 6	B	196	201	anti-parallel
Strand 7	B	230	235	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	366	367	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	420	426	anti-parallel
Strand 3	B	446	453	anti-parallel
Strand 4	B	460	467	anti-parallel
Strand 5	B	495	500	parallel
Strand 6	B	717	721	anti-parallel
Strand 7	B	680	684	parallel
Strand 8	B	671	675	anti-parallel
Strand 9	B	641	646	anti-parallel
Strand 10	B	653	656	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	517	520	parallel
Strand 3	B	549	554	parallel
Strand 4	B	537	543	anti-parallel
Strand 5	B	566	570	anti-parallel
Strand 6	B	575	579	anti-parallel
Strand 7	B	603	606	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JEG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEG