Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JEL entry

There are 2 chains in PDB entry 6JEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLN 466
B
 ALA 5GLN 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6JEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
80 92Right-handed alpha
Helix 5
AA5
A
92 107Right-handed alpha
Helix 6
AA6
A
120 128Right-handed alpha
Helix 7
AA7
A
139 156Right-handed alpha
Helix 8
AA8
A
159 163Right-handed 310
Helix 9
AA9
A
176 180Right-handed 310
Helix 10
AB1
A
181 186Right-handed 310
Helix 11
AB2
A
189 200Right-handed alpha
Helix 12
AB3
A
201 205Right-handed 310
Helix 13
AB4
A
213 216Right-handed 310
Helix 14
AB5
A
217 227Right-handed alpha
Helix 15
AB6
A
253 260Right-handed alpha
Helix 16
AB7
A
278 293Right-handed alpha
Helix 17
AB8
A
328 333Right-handed alpha
Helix 18
AB9
A
345 352Right-handed alpha
Helix 19
AC1
A
363 374Right-handed alpha
Helix 20
AC2
A
385 395Right-handed alpha
Helix 21
AC3
A
412 425Right-handed alpha
Helix 22
AC4
A
426 447Right-handed alpha
Helix 23
AC5
A
451 465Right-handed alpha
Helix 24
AC6
B
15 33Right-handed alpha
Helix 25
AC7
B
48 57Right-handed alpha
Helix 26
AC8
B
71 75Right-handed 310
Helix 27
AC9
B
80 107Right-handed alpha
Helix 28
AD1
B
118 120Right-handed 310
Helix 29
AD2
B
121 128Right-handed alpha
Helix 30
AD3
B
139 148Right-handed alpha
Helix 31
AD4
B
148 156Right-handed alpha
Helix 32
AD5
B
159 163Right-handed 310
Helix 33
AD6
B
176 180Right-handed 310
Helix 34
AD7
B
181 186Right-handed 310
Helix 35
AD8
B
189 200Right-handed alpha
Helix 36
AD9
B
201 205Right-handed 310
Helix 37
AE1
B
213 216Right-handed 310
Helix 38
AE2
B
217 227Right-handed alpha
Helix 39
AE3
B
253 260Right-handed alpha
Helix 40
AE4
B
278 293Right-handed alpha
Helix 41
AE5
B
328 333Right-handed alpha
Helix 42
AE6
B
345 352Right-handed alpha
Helix 43
AE7
B
363 374Right-handed alpha
Helix 44
AE8
B
385 395Right-handed alpha
Helix 45
AE9
B
412 426Right-handed alpha
Helix 46
AF1
B
426 447Right-handed alpha
Helix 47
AF2
B
451 465Right-handed alpha
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There are 4 sheets in PDB entry 6JEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
36 41parallel
Strand 3
A
7 11parallel
Strand 4
A
109 114parallel
Strand 5
A
132 136parallel
Strand 6
A
207 210parallel
Strand 7
A
234 236parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
295 300parallel
Strand 3
A
266 269parallel
Strand 4
A
355 360parallel
Strand 5
A
377 379parallel
Strand 6
A
400 401parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
36 41parallel
Strand 3
B
7 11parallel
Strand 4
B
109 114parallel
Strand 5
B
132 136parallel
Strand 6
B
207 210parallel
Strand 7
B
234 236parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 341first strand
Strand 2
B
295 300parallel
Strand 3
B
266 269parallel
Strand 4
B
355 360parallel
Strand 5
B
377 379parallel
Strand 6
B
400 401parallel
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