Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JEN entry

There are 3 chains in PDB entry 6JEN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	GLN 466
B	ALA 5	GLN 466
C	MET 1	TRP 464

There are 68 helices in PDB entry 6JEN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	33	Right-handed alpha
Helix 2	AA2	A	48	57	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	80	91	Right-handed alpha
Helix 5	AA5	A	92	107	Right-handed alpha
Helix 6	AA6	A	120	128	Right-handed alpha
Helix 7	AA7	A	139	148	Right-handed alpha
Helix 8	AA8	A	148	156	Right-handed alpha
Helix 9	AA9	A	159	163	Right-handed 310
Helix 10	AB1	A	176	180	Right-handed 310
Helix 11	AB2	A	181	186	Right-handed 310
Helix 12	AB3	A	189	200	Right-handed alpha
Helix 13	AB4	A	201	205	Right-handed 310
Helix 14	AB5	A	213	216	Right-handed 310
Helix 15	AB6	A	217	227	Right-handed alpha
Helix 16	AB7	A	253	260	Right-handed alpha
Helix 17	AB8	A	278	293	Right-handed alpha
Helix 18	AB9	A	328	333	Right-handed alpha
Helix 19	AC1	A	345	352	Right-handed alpha
Helix 20	AC2	A	363	373	Right-handed alpha
Helix 21	AC3	A	385	396	Right-handed alpha
Helix 22	AC4	A	412	425	Right-handed alpha
Helix 23	AC5	A	426	447	Right-handed alpha
Helix 24	AC6	A	451	466	Right-handed alpha
Helix 25	AC7	B	15	33	Right-handed alpha
Helix 26	AC8	B	48	57	Right-handed alpha
Helix 27	AC9	B	80	92	Right-handed alpha
Helix 28	AD1	B	92	107	Right-handed alpha
Helix 29	AD2	B	120	128	Right-handed alpha
Helix 30	AD3	B	139	156	Right-handed alpha
Helix 31	AD4	B	159	163	Right-handed 310
Helix 32	AD5	B	176	180	Right-handed 310
Helix 33	AD6	B	181	186	Right-handed 310
Helix 34	AD7	B	189	200	Right-handed alpha
Helix 35	AD8	B	201	205	Right-handed 310
Helix 36	AD9	B	213	216	Right-handed 310
Helix 37	AE1	B	217	225	Right-handed alpha
Helix 38	AE2	B	253	261	Right-handed alpha
Helix 39	AE3	B	278	293	Right-handed alpha
Helix 40	AE4	B	328	333	Right-handed alpha
Helix 41	AE5	B	345	352	Right-handed alpha
Helix 42	AE6	B	363	373	Right-handed alpha
Helix 43	AE7	B	385	396	Right-handed alpha
Helix 44	AE8	B	412	425	Right-handed alpha
Helix 45	AE9	B	426	447	Right-handed alpha
Helix 46	AF1	B	451	466	Right-handed alpha
Helix 47	AF2	C	15	33	Right-handed alpha
Helix 48	AF3	C	48	57	Right-handed alpha
Helix 49	AF4	C	80	91	Right-handed alpha
Helix 50	AF5	C	92	107	Right-handed alpha
Helix 51	AF6	C	120	128	Right-handed alpha
Helix 52	AF7	C	139	156	Right-handed alpha
Helix 53	AF8	C	159	163	Right-handed 310
Helix 54	AF9	C	176	180	Right-handed 310
Helix 55	AG1	C	181	186	Right-handed 310
Helix 56	AG2	C	189	200	Right-handed alpha
Helix 57	AG3	C	201	205	Right-handed 310
Helix 58	AG4	C	213	216	Right-handed 310
Helix 59	AG5	C	217	228	Right-handed alpha
Helix 60	AG6	C	253	260	Right-handed alpha
Helix 61	AG7	C	278	293	Right-handed alpha
Helix 62	AG8	C	328	333	Right-handed alpha
Helix 63	AG9	C	345	352	Right-handed alpha
Helix 64	AH1	C	363	373	Right-handed alpha
Helix 65	AH2	C	385	396	Right-handed alpha
Helix 66	AH3	C	412	425	Right-handed alpha
Helix 67	AH4	C	426	447	Right-handed alpha
Helix 68	AH5	C	451	464	Right-handed alpha

There are 6 sheets in PDB entry 6JEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	36	41	parallel
Strand 3	A	7	11	parallel
Strand 4	A	109	114	parallel
Strand 5	A	132	136	parallel
Strand 6	A	207	210	parallel
Strand 7	A	234	236	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	295	300	parallel
Strand 3	A	266	269	parallel
Strand 4	A	355	360	parallel
Strand 5	A	377	379	parallel
Strand 6	A	400	401	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	36	41	parallel
Strand 3	B	7	11	parallel
Strand 4	B	109	114	parallel
Strand 5	B	132	136	parallel
Strand 6	B	207	210	parallel
Strand 7	B	234	236	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	295	299	parallel
Strand 3	B	266	270	parallel
Strand 4	B	355	360	parallel
Strand 5	B	377	379	parallel
Strand 6	B	400	401	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	36	41	parallel
Strand 3	C	7	11	parallel
Strand 4	C	109	114	parallel
Strand 5	C	132	136	parallel
Strand 6	C	207	210	parallel
Strand 7	C	234	236	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	341	first strand
Strand 2	C	295	300	parallel
Strand 3	C	266	270	parallel
Strand 4	C	355	360	parallel
Strand 5	C	377	379	parallel
Strand 6	C	400	401	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JEN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEN