Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6JEP entry

There are 6 chains in PDB entry 6JEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	LYS 235
L	SER 1	THR 214
E	VAL 303	SER 403
K	GLU 1	LYS 235
I	SER 1	THR 214
F	VAL 303	SER 403

There are 20 helices in PDB entry 6JEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	68	71	Right-handed 310
Helix 2	AA2	H	80	82	Right-handed 310
Helix 3	AA3	H	93	97	Right-handed 310
Helix 4	AA4	H	177	179	Right-handed 310
Helix 5	AA5	H	208	212	Right-handed 310
Helix 6	AA6	H	222	224	Right-handed 310
Helix 7	AA7	L	80	84	Right-handed 310
Helix 8	AA8	L	126	132	Right-handed alpha
Helix 9	AA9	L	186	192	Right-handed alpha
Helix 10	AB1	E	391	395	Right-handed 310
Helix 11	AB2	K	68	71	Right-handed 310
Helix 12	AB3	K	80	82	Right-handed 310
Helix 13	AB4	K	93	97	Right-handed 310
Helix 14	AB5	K	177	179	Right-handed 310
Helix 15	AB6	K	208	212	Right-handed 310
Helix 16	AB7	K	222	224	Right-handed 310
Helix 17	AB8	I	80	84	Right-handed 310
Helix 18	AB9	I	126	132	Right-handed alpha
Helix 19	AC1	I	186	192	Right-handed alpha
Helix 20	AC2	F	391	395	Right-handed 310

There are 33 sheets in PDB entry 6JEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	84	89	anti-parallel
Strand 4	H	74	79	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	128	132	parallel
Strand 3	H	98	106	anti-parallel
Strand 4	H	38	45	anti-parallel
Strand 5	H	52	57	anti-parallel
Strand 6	H	64	66	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	128	132	parallel
Strand 3	H	98	106	anti-parallel
Strand 4	H	123	124	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	111	first strand
Strand 2	H	114	116	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	145	first strand
Strand 2	H	156	166	anti-parallel
Strand 3	H	197	206	anti-parallel
Strand 4	H	184	186	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	145	first strand
Strand 2	H	156	166	anti-parallel
Strand 3	H	197	206	anti-parallel
Strand 4	H	190	191	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	175	first strand
Strand 2	H	216	221	anti-parallel
Strand 3	H	226	231	anti-parallel
Strand 4	K	226	232	anti-parallel
Strand 5	K	215	221	anti-parallel
Strand 6	K	172	175	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	99	102	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	205	211	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	332	anti-parallel
Strand 3	E	319	320	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	332	anti-parallel
Strand 3	E	372	379	anti-parallel
Strand 4	E	357	358	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	364	365	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	355	first strand
Strand 2	E	343	346	anti-parallel
Strand 3	E	383	389	anti-parallel
Strand 4	E	396	402	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	84	89	anti-parallel
Strand 4	K	74	79	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	128	132	parallel
Strand 3	K	98	106	anti-parallel
Strand 4	K	38	45	anti-parallel
Strand 5	K	52	57	anti-parallel
Strand 6	K	64	66	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	128	132	parallel
Strand 3	K	98	106	anti-parallel
Strand 4	K	123	124	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	109	111	first strand
Strand 2	K	114	116	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	145	first strand
Strand 2	K	156	166	anti-parallel
Strand 3	K	197	206	anti-parallel
Strand 4	K	184	186	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	153	first strand
Strand 2	K	156	166	anti-parallel
Strand 3	K	197	206	anti-parallel
Strand 4	K	190	191	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	106	110	parallel
Strand 3	I	85	93	anti-parallel
Strand 4	I	35	39	anti-parallel
Strand 5	I	46	49	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	106	110	parallel
Strand 3	I	85	93	anti-parallel
Strand 4	I	99	102	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	71	76	anti-parallel
Strand 3	I	63	68	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	135	144	anti-parallel
Strand 3	I	177	185	anti-parallel
Strand 4	I	164	166	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	135	144	anti-parallel
Strand 3	I	177	185	anti-parallel
Strand 4	I	170	171	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	160	first strand
Strand 2	I	150	155	anti-parallel
Strand 3	I	196	202	anti-parallel
Strand 4	I	205	211	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	314	first strand
Strand 2	F	326	332	anti-parallel
Strand 3	F	319	320	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	314	first strand
Strand 2	F	326	332	anti-parallel
Strand 3	F	372	379	anti-parallel
Strand 4	F	357	358	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	340	first strand
Strand 2	F	364	365	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	346	first strand
Strand 2	F	383	389	anti-parallel
Strand 3	F	396	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6JEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6JEP