Analysis of interatomic Contacts of Structural Units in PDB entry:
6JF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JF1 entry

There is 1 chain in PDB entry 6JF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -21TRP 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
75 82Right-handed alpha
Helix 3
AA3
A
93 104Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
148 162Right-handed alpha
Helix 6
AA6
A
176 178Right-handed 310
Helix 7
AA7
A
193 197Right-handed 310
Helix 8
AA8
A
198 203Right-handed 310
Helix 9
AA9
A
210 214Right-handed 310
Helix 10
AB1
A
220 224Right-handed 310
Helix 11
AB2
A
233 237Right-handed 310
Helix 12
AB3
A
246 250Right-handed 310
Helix 13
AB4
A
252 264Right-handed alpha
Helix 14
AB5
A
265 276Right-handed alpha
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There are 5 sheets in PDB entry 6JF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-17 -13first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
35 41parallel
Strand 4
A
87 92parallel
Strand 5
A
239 243anti-parallel
Strand 6
A
108 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
281 282anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
142 146parallel
Strand 3
A
206 209parallel
Strand 4
A
119 122anti-parallel
Strand 5
A
226 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
180 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il