Analysis of interatomic Contacts of Structural Units in PDB entry:
6JF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JF5 entry

There are 2 chains in PDB entry 6JF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2ILE 159
A
 SER 2ARG 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6JF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 17Right-handed 310
Helix 2
AA2
B
23 27Right-handed 310
Helix 3
AA3
B
29 46Right-handed alpha
Helix 4
AA4
B
54 57Right-handed 310
Helix 5
AA5
B
137 151Right-handed alpha
Helix 6
AA6
B
154 159Right-handed 310
Helix 7
AA7
A
12 17Right-handed 310
Helix 8
AA8
A
23 27Right-handed 310
Helix 9
AA9
A
29 46Right-handed alpha
Helix 10
AB1
A
54 57Right-handed 310
Helix 11
AB2
A
137 151Right-handed alpha
Helix 12
AB3
A
154 158Right-handed 310
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There are 4 sheets in PDB entry 6JF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
79 92anti-parallel
Strand 4
B
118 124anti-parallel
Strand 5
B
130 136anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 103first strand
Strand 2
B
106 116anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
82 92anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
A
130 136anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
111 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il