Analysis of interatomic Contacts of Structural Units in PDB entry:
6JF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JF9 entry

There are 2 chains in PDB entry 6JF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LEU 171
B
 ILE 4PRO 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6JF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
29 47Right-handed alpha
Helix 4
AA4
A
54 57Right-handed 310
Helix 5
AA5
A
137 150Right-handed alpha
Helix 6
AA6
A
154 159Right-handed 310
Helix 7
AA7
A
161 165Right-handed 310
Helix 8
AA8
B
12 17Right-handed 310
Helix 9
AA9
B
23 27Right-handed 310
Helix 10
AB1
B
29 47Right-handed alpha
Helix 11
AB2
B
54 57Right-handed 310
Helix 12
AB3
B
137 150Right-handed alpha
Helix 13
AB4
B
154 159Right-handed 310
Helix 14
AB5
B
161 165Right-handed 310
Helix 15
AB6
B
168 172Right-handed alpha
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There are 4 sheets in PDB entry 6JF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
82 91anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
A
130 136anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
109 116anti-parallel
Strand 3
A
166 167anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
62 67anti-parallel
Strand 3
B
79 91anti-parallel
Strand 4
B
118 124anti-parallel
Strand 5
B
130 136anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 101first strand
Strand 2
B
109 116anti-parallel
Strand 3
B
166 167anti-parallel
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