Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JFK entry

There is 1 chain in PDB entry 6JFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 24SER 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6JFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 63Right-handed alpha
Helix 2
AA2
A
71 93Right-handed alpha
Helix 3
AA3
A
108 117Right-handed alpha
Helix 4
AA4
A
159 169Right-handed alpha
Helix 5
AA5
A
188 193Right-handed alpha
Helix 6
AA6
A
208 217Right-handed alpha
Helix 7
AA7
A
234 248Right-handed alpha
Helix 8
AA8
A
259 266Right-handed 310
Helix 9
AA9
A
269 288Right-handed alpha
Helix 10
AB1
A
293 299Right-handed 310
Helix 11
AB2
A
305 318Right-handed alpha
Helix 12
AB3
A
321 326Right-handed 310
Helix 13
AB4
A
330 398Right-handed alpha
Helix 14
AB5
A
709 753Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6JFK.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
133 139parallel
Strand 5
A
195 199anti-parallel
Strand 6
A
97 102parallel
Strand 7
A
222 228parallel
Strand 8
A
252 258parallel
Strand 9
A
301 303parallel
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