Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JFM entry

There are 2 chains in PDB entry 6JFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 25PRO 755
B
 VAL 24SER 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6JFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 62Right-handed alpha
Helix 2
AA2
A
71 95Right-handed alpha
Helix 3
AA3
A
104 107Right-handed 310
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
159 170Right-handed alpha
Helix 6
AA6
A
188 193Right-handed alpha
Helix 7
AA7
A
211 217Right-handed alpha
Helix 8
AA8
A
234 248Right-handed alpha
Helix 9
AA9
A
259 265Right-handed 310
Helix 10
AB1
A
266 287Right-handed alpha
Helix 11
AB2
A
293 299Right-handed 310
Helix 12
AB3
A
305 318Right-handed alpha
Helix 13
AB4
A
330 398Right-handed alpha
Helix 14
AB5
A
709 753Right-handed alpha
Helix 15
AB6
B
29 63Right-handed alpha
Helix 16
AB7
B
71 95Right-handed alpha
Helix 17
AB8
B
105 107Right-handed 310
Helix 18
AB9
B
108 118Right-handed alpha
Helix 19
AC1
B
159 170Right-handed alpha
Helix 20
AC2
B
188 193Right-handed alpha
Helix 21
AC3
B
211 217Right-handed alpha
Helix 22
AC4
B
234 248Right-handed alpha
Helix 23
AC5
B
259 265Right-handed 310
Helix 24
AC6
B
266 287Right-handed alpha
Helix 25
AC7
B
293 299Right-handed 310
Helix 26
AC8
B
305 319Right-handed alpha
Helix 27
AC9
B
330 398Right-handed alpha
Helix 28
AD1
B
709 753Right-handed alpha
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There are 2 sheets in PDB entry 6JFM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
178 184anti-parallel
Strand 4
A
133 139parallel
Strand 5
A
195 199anti-parallel
Strand 6
A
97 102parallel
Strand 7
A
222 228parallel
Strand 8
A
252 258parallel
Strand 9
A
301 303parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
145 147anti-parallel
Strand 3
B
178 184anti-parallel
Strand 4
B
133 139parallel
Strand 5
B
195 199anti-parallel
Strand 6
B
97 103parallel
Strand 7
B
222 228parallel
Strand 8
B
252 258parallel
Strand 9
B
301 303parallel
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