Analysis of interatomic Contacts of Structural Units in PDB entry:
6JFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6JFP entry

There are 2 chains in PDB entry 6JFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 2LEU 445
A
 ILE 2LEU 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6JFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
15 20Right-handed alpha
Helix 2
AA2
B
24 28Right-handed 310
Helix 3
AA3
B
31 38Right-handed alpha
Helix 4
AA4
B
54 69Right-handed alpha
Helix 5
AA5
B
79 84Right-handed alpha
Helix 6
AA6
B
92 109Right-handed alpha
Helix 7
AA7
B
123 129Right-handed alpha
Helix 8
AA8
B
130 135Right-handed 310
Helix 9
AA9
B
136 153Right-handed alpha
Helix 10
AB1
B
164 173Right-handed alpha
Helix 11
AB2
B
186 210Right-handed alpha
Helix 12
AB3
B
229 252Right-handed alpha
Helix 13
AB4
B
257 265Right-handed alpha
Helix 14
AB5
B
266 268Right-handed 310
Helix 15
AB6
B
272 280Right-handed alpha
Helix 16
AB7
B
326 341Right-handed alpha
Helix 17
AB8
B
367 387Right-handed alpha
Helix 18
AB9
B
404 411Right-handed 310
Helix 19
AC1
B
428 441Right-handed alpha
Helix 20
AC2
A
15 20Right-handed alpha
Helix 21
AC3
A
24 28Right-handed 310
Helix 22
AC4
A
31 39Right-handed alpha
Helix 23
AC5
A
54 69Right-handed alpha
Helix 24
AC6
A
79 84Right-handed alpha
Helix 25
AC7
A
92 109Right-handed alpha
Helix 26
AC8
A
123 129Right-handed alpha
Helix 27
AC9
A
130 135Right-handed 310
Helix 28
AD1
A
136 153Right-handed alpha
Helix 29
AD2
A
164 173Right-handed alpha
Helix 30
AD3
A
186 210Right-handed alpha
Helix 31
AD4
A
229 252Right-handed alpha
Helix 32
AD5
A
257 265Right-handed alpha
Helix 33
AD6
A
266 268Right-handed 310
Helix 34
AD7
A
272 280Right-handed alpha
Helix 35
AD8
A
325 341Right-handed alpha
Helix 36
AD9
A
367 387Right-handed alpha
Helix 37
AE1
A
404 411Right-handed 310
Helix 38
AE2
A
428 441Right-handed alpha
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There are 6 sheets in PDB entry 6JFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
73 77parallel
Strand 3
B
112 118parallel
Strand 4
B
158 163parallel
Strand 5
B
213 219parallel
Strand 6
B
285 289parallel
Strand 7
B
345 350parallel
Strand 8
B
391 397parallel
Strand 9
B
9 13parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
294 298parallel
Strand 3
B
307 309anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 418first strand
Strand 2
B
425 427anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
73 77parallel
Strand 3
A
112 118parallel
Strand 4
A
158 163parallel
Strand 5
A
213 219parallel
Strand 6
A
285 289parallel
Strand 7
A
345 350parallel
Strand 8
A
391 397parallel
Strand 9
A
9 13parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
294 298parallel
Strand 3
A
307 309anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 419first strand
Strand 2
A
424 427anti-parallel
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